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Pull requests: scverse/anndata

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Pull requests list

Backport PR #2307 on branch 0.12.x (fix: empty Dataset2D warning + columns setting implementation) skip-gpu-ci
#2312 opened Jan 23, 2026 by meeseeksmachine Loading… 0.12.8
1
chore: remove zarr v2 the package + default to v3 format skip-gpu-ci
#2309 opened Jan 22, 2026 by ilan-gold • Draft
3 tasks
0.13.0
@ilan-gold
1
chore: add warning for zarr format v2 skip-gpu-ci
#2306 opened Jan 21, 2026 by ilan-gold Loading…
1 of 3 tasks
0.12.8
@ilan-gold
10
test: increase memory limit for flaky test_size_of_view skip-gpu-ci
#2302 opened Jan 19, 2026 by katosh Loading…
1 of 3 tasks
0.12.8
1
3
ci: pre-commit autoupdate
#2300 opened Jan 19, 2026 by pre-commit-ci bot Loading…
1
docs: skip inherited members without code skip-gpu-ci
#2298 opened Jan 16, 2026 by flying-sheep • Draft
1
docs: Sphinx 9 skip-gpu-ci
#2297 opened Jan 15, 2026 by flying-sheep • Draft 0.12.8
1
feat: accessors skip-gpu-ci
#2290 opened Jan 8, 2026 by flying-sheep • Draft
2 of 6 tasks
0.13.0
1
1
feat: add LazyCategoricalDtype for lazy categorical columns
#2288 opened Jan 8, 2026 by katosh Loading…
3 tasks done
1
41
feat: allow reading nullable arrays without mask on disk
#2279 opened Jan 5, 2026 by flying-sheep • Draft
3 tasks
0.13.0
1
chore: upgrade to cupy-cuda13
#2269 opened Dec 30, 2025 by ilan-gold Loading…
3 tasks
0.13.0
1
Update template to v0.7.0
#2264 opened Dec 24, 2025 by scverse-bot Loading…
chore(deps): bump actions/cache from 4 to 5 no milestone skip-gpu-ci
#2251 opened Dec 15, 2025 by dependabot bot Loading…
1
feat: Add HTML representation
#2236 opened Nov 29, 2025 by katosh Loading…
3 tasks done
1
25
chore: add type annotation
#2229 opened Nov 19, 2025 by szabgab Loading…
1
ci: use codecov flags
#2217 opened Nov 11, 2025 by flying-sheep • Draft 0.12.8
1
Pa/name-conventions
#2208 opened Nov 6, 2025 by flying-sheep • Draft
3 tasks
1
feat: create parent dirs when writing into h5ad
#2186 opened Oct 30, 2025 by marcfranquesa Loading…
3
Add type-checking
#2174 opened Oct 25, 2025 by szabgab Loading…
3 tasks done
19
perf: add ability to write downcasted indices benchmark performance 🐌 skip-gpu-ci topic: io type: sparse 🫥
#2159 opened Oct 20, 2025 by ilan-gold Loading…
4 of 5 tasks
0.12.8
1
5
Add batch_converter hook + multiprocessing support to experimental.pytorch.AnnLoader
#2135 opened Sep 29, 2025 by ronamit Loading…
feat: support array-api run-gpu-ci
#2071 opened Aug 11, 2025 by amalia-k510 Loading… 0.13.0
3
@ilan-gold
84
fix: allow categorical index in read_lazy skip-gpu-ci
#2062 opened Jul 29, 2025 by ilan-gold Loading…
3 tasks
0.12.8
4
feat: Usage of H5py Virtual Datasets for concat_on_disk skip-gpu-ci
#2032 opened Jul 17, 2025 by selmanozleyen Loading…
3 tasks done
0.12.8
@selmanozleyen
13
Improve concat_on_disk varm handling
#2003 opened Jun 3, 2025 by amalia-k510 • Draft
@ilan-gold @amalia-k510
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