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Pull requests: satijalab/seurat

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Pull requests list

Avoid densifying matrix in ProjectCellEmbeddings
#10337 opened Mar 18, 2026 by assaron Loading…
Fix SCTransform umi.assay incorrect source assay labels
#10330 opened Mar 13, 2026 by YoukaiFromAccounting Loading…
1
2
Warning message for reference SCT model counts correction
#10329 opened Mar 13, 2026 by mccormickceci Loading…
1
4
Fix typos in Spatial Vignette Rmd
#10320 opened Mar 6, 2026 by YoukaiFromAccounting Loading…
2
fix issues with image orientation for curio-seeker data
#10302 opened Feb 9, 2026 by Liuy12 Loading…
1
Fix link to NEWS file in README
#10257 opened Dec 23, 2025 by mihem Loading…
1
Fix ggplot2 v4 compatibility
#10225 opened Nov 27, 2025 by BenjaminDEMAILLE Loading…
1
16
Fix typos in spatial and Visium HD vignettes
#10217 opened Nov 20, 2025 by liuzhenyu-yyy Loading…
1
Fix Bug in IntegrateEmbeddings when Ref is specified
#10172 opened Oct 29, 2025 by lldelisle Loading…
Fix do.call slowdown by amending Parenting
#10161 opened Oct 26, 2025 by ning-y Loading…
1
5
Change default value of verbose parameter for LeverageScore within sketchdata
#10145 opened Oct 20, 2025 by Liuy12 Loading…
1
feat: Ultra-large matrix support and Read10X performance optimization
#10017 opened Jul 25, 2025 by BenjaminDEMAILLE Loading…
1
Feature: Updates for Space Ranger 4.0
#9978 opened Jul 1, 2025 by stephenwilliams22 • Draft
5 tasks
21
Add support for Vizgen objects for InteractiveSpatialPlot
#9977 opened Jul 1, 2025 by YoukaiFromAccounting • Draft
4
update broken link
#9976 opened Jul 1, 2025 by attja Loading…
changes made to view the pages on the lower side
#9934 opened Jun 6, 2025 by abhilashdasari Loading…
Improves DimHeatmap documentation and default behavior when fast=FALSE (Issue #9810)
#9813 opened Apr 10, 2025 by dkcoxie Loading…
1
24
Update interaction link
#9741 opened Mar 10, 2025 by attja Loading…
add function readMM_fast
#9731 opened Mar 6, 2025 by freeseek Loading…
feature: updates for cellranger 9.0
#9541 opened Dec 10, 2024 by stephenwilliams22 Loading…
37
Added the functionality of scale.factor in NormalizeData being set to "median" of counts
#9389 opened Oct 11, 2024 by pranavm2109 Loading…
Add Option to Plot Percentage of Variance Explained in ElbowPlot Func…
#8929 opened May 24, 2024 by moi-taiga Loading…
1
Sketch Data Improvement
#8913 opened May 18, 2024 by Sandman-1 Loading…
Fixed min.cells.group issue in FindConservedMarkers()
#8910 opened May 17, 2024 by hamelyz Loading…
Fix PercentageFeatureSet
#8659 opened Mar 20, 2024 by maxim-h Loading…
3
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