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[python] Merge the somacore library directly into the tiledbsom python library#4403

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jp-dark wants to merge 7 commits intomainfrom
dark/remove-somacore
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[python] Merge the somacore library directly into the tiledbsom python library#4403
jp-dark wants to merge 7 commits intomainfrom
dark/remove-somacore

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@jp-dark jp-dark commented Feb 3, 2026

Issue and/or context: Closes SOMA-822

Changes:
This PR moves the somacore library directly into TileDB-SOMA and removes duplicate code between the two libraries where possible.

@jp-dark jp-dark force-pushed the dark/remove-somacore branch from 891f59f to d3727f1 Compare February 6, 2026 16:43
@jp-dark jp-dark force-pushed the dark/remove-somacore branch from d3727f1 to 3aea669 Compare February 13, 2026 20:06
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codecov bot commented Feb 13, 2026

Codecov Report

❌ Patch coverage is 92.56757% with 44 lines in your changes missing coverage. Please review.
✅ Project coverage is 88.94%. Comparing base (f42a16f) to head (a9e1b1f).

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #4403      +/-   ##
==========================================
+ Coverage   86.15%   88.94%   +2.78%     
==========================================
  Files         140       68      -72     
  Lines       21210     7722   -13488     
  Branches       13        0      -13     
==========================================
- Hits        18274     6868   -11406     
+ Misses       2936      854    -2082     
Flag Coverage Δ
python 88.94% <92.56%> (+<0.01%) ⬆️
r ?

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Components Coverage Δ
python_api 88.94% <92.56%> (+<0.01%) ⬆️
libtiledbsoma ∅ <ø> (∅)
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