v2.1.4

2.1.4

Changes

• Added alternative argument to decoupler.mt.query_set. By default 'greater', before it was 'two-sided'
• Unpinned scipy version limit

Bugfixes

• Fixed missing progressbar for decoupler._download._download
• Added missing decoupler.mt.query_set documentation

v2.1.3

• pp.adjmat now returns the same features as used as input instead of the subset of net
• pp.pseudobulk now returns the same order features as used as input instead of shuffling them
• Added a dedicated header and 5 attempts to _download to mitigate 429 Client Error from Zenodo downloads

v2.1.2

Added

• pp.query_set to test overlap between a given feature set against a database of sets

Changes

• tl.rankby_obsm now accepts AnnData.obs column names specified in the obs_keys argument
• Most plotting functions now accept extra arguments through kw_ arguments.
• p-values now are corrected using a custom numba-optimized version of scipy.stats.false_discovery_control called _fdr_bh_axis1_numba

v2.1.1

2.1.1

Added

• mypy checks in CI
• notebook checks in CI

Bugfixes

• Fixed error in decoupler.pp.pseudobulk when adata.obs_names were not unique, now throws verbose error
• Fixed corner case in decoupler.mt.gsea when p-values were infitite and could not be corrected

v2.1.0

Changes

• Updated logo
• decoupler._download._download now returns bytes instead of a dataframe. To transform to pandas.DataFrame use decoupler._download._bytes_to_pandas
• Enrichment methods and pseudobulking now work with backed AnnData objects, useful when working with big datasets and memory is limited

Bugfixes

• Fixed error in pl.obsm where default value of cmap_obs was not properly set.

v2.0.7

Added pre-commit

v2.0.6

Modified links and paths to follow scverse repo

v2.0.5

Fixed error message when extra dependencies where not installed.

v2.0.4

Fixed dcor import bug as an external dependency

v2.0.3

Bugfix for pp.pseudobulk when obs columns were not categorical.