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IT engineer turned data engineer with a side of data scientist, working as a system developer at Lund University.
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parashardhapola/scarf
parashardhapola/scarf PublicToolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
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DB_AKC_citeseq
DB_AKC_citeseq PublicAccompanying code for analysis of manuscript in Nature Aging: Implications of stress-induced gene expression for hematopoietic stem cell aging studies
HTML
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CB_FL
CB_FL PublicAccompanying code for: Single-cell multiomics of human fetal hematopoiesis defines a developmental specific population and a fetal signature
R
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DB_QZ_multiome
DB_QZ_multiome PublicMultiome (RNA+ATAC from same cell) data generated by Qinyu Zhang in David Bryder's lab. Paper here: https://doi.org/10.7554/eLife.91826.2
Python
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