Error in the example for feature-table summarize

[timyerg]

Issue / error:

The plugin "feature table summarize" suggests the following example command:

Examples:
  # ### example: feature table summarize
  qiime feature-table summarize \
    --i-table feature-table.qza \
    --o-feature-frequencies feature-frequencies.qza \
    --o-sample-frequencies sample-frequencies.qza \
    --o-summary visual summary.qzv

Which gives the error:

                    There was a problem with the command:                     
 (1/1) Got unexpected extra argument (Data/Dada2/summary.qzv)

Solution

The example command should be:

Examples:
  # ### example: feature table summarize
  qiime feature-table summarize \
    --i-table feature-table.qza \
    --o-feature-frequencies feature-frequencies.qza \
    --o-sample-frequencies sample-frequencies.qza \
    --o-summary summary.qzv

Encountered on qiime2-amplicon-2026.1

[Oddant1]

hmmm. Thank you for catching this @timyerg. I don't love that this did't cause unit tests to fail.