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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. qiime2 qiime2 Public

    Source for the QIIME 2 Framework (Q2F).

    Python 527 260

  2. distributions distributions Public

    Makefile 5 11

  3. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 29

  4. docs docs Public archive

    Python 21 60

Repositories

Showing 10 of 81 repositories
  • q2templates Public

    Design template package for QIIME 2 Plugins

    qiime2/q2templates’s past year of commit activity
    Python 4 BSD-3-Clause 15 0 3 Updated Jan 21, 2026
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 5 BSD-3-Clause 11 6 8 Updated Jan 21, 2026
  • q2-feature-table Public

    QIIME 2 plugin supporting operations on feature tables.

    qiime2/q2-feature-table’s past year of commit activity
    Python 2 BSD-3-Clause 41 22 (2 issues need help) 1 Updated Jan 21, 2026
  • q2-longitudinal Public

    QIIME 2 plugin for paired sample comparisons

    qiime2/q2-longitudinal’s past year of commit activity
    Python 9 BSD-3-Clause 17 28 (4 issues need help) 1 Updated Jan 21, 2026
  • q2-vizard Public

    The first choice of wizard lizards for interactive, generalized microbiome data visualization!

    qiime2/q2-vizard’s past year of commit activity
    Python 1 BSD-3-Clause 13 6 2 Updated Jan 21, 2026
  • qiime2/action-library-packaging’s past year of commit activity
    Python 0 BSD-3-Clause 5 0 1 Updated Jan 21, 2026
  • qiime2 Public

    Source for the QIIME 2 Framework (Q2F).

    qiime2/qiime2’s past year of commit activity
    Python 527 BSD-3-Clause 260 65 (4 issues need help) 5 Updated Jan 21, 2026
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 2 3 0 Updated Jan 21, 2026
  • q2doc Public

    A MyST executable plugin for documenting QIIME 2 plugins.

    qiime2/q2doc’s past year of commit activity
    Python 0 2 5 1 Updated Jan 20, 2026
  • q2-alignment Public

    Support for multiple sequence alignment in QIIME 2.

    qiime2/q2-alignment’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 23 6 1 Updated Jan 20, 2026