Skip to content

pedrofale/SpOTr

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

42 Commits
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Tree-informed optimal transport of single-cell and spatial transcriptomics

ST data gives us gene expression and a neighborhood graph, and SS3 data gives us gene expression and a tree. Can we use the complementary modalities to match the cells from each modality? How much do the phylogeny and the spatial structure agree?

About

Integrate single-cell and spatial transcriptomics data using a tumor phylogeny.

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

 
 
 

Contributors

Languages