Repositories list

• pfocr-database

  Public
  Jekyll setup and database for the Pathway Figure OCR project

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •55 forks•00 stars•66 issues•00 pull requests•Updated Apr 8, 2026Apr 8, 2026

• wikipathways.github.io

  Public
  GitHub pages for GPML-Repo

  HTML

  •2525 forks•99 stars•1717 issues•00 pull requests•Updated Apr 5, 2026Apr 5, 2026

• wikipathways-database

  Public
  WikiPathways Database

  bioinformaticsbiologypathway-analysis+ 2

  bioinformaticsbiologypathway-analysiswikipathwayspathway-enrichment-analysis

  Shell

  •2121 forks•1212 stars•1616 issues•00 pull requests•Updated Apr 5, 2026Apr 5, 2026

• Snorql-UI

  Public
  JavaScript

  •

  GNU General Public License v3.0

  •77 forks•22 stars•33 issues•00 pull requests•Updated Apr 3, 2026Apr 3, 2026

• webservice

  Public
  HTML

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 1, 2026Apr 1, 2026

• wikipathways-collection

  Public
  Java

  •11 fork•00 stars•11 issue•00 pull requests•Updated Mar 31, 2026Mar 31, 2026

• SPARQLQueries

  Public
  Queries for the WikiPathways SPARQL endpoint.

  sparqlrdfwikipathways

  sparqlrdfwikipathways

  Python

  •

  GNU General Public License v3.0

  •33 forks•22 stars•77 issues•00 pull requests•Updated Mar 31, 2026Mar 31, 2026

• wikipathways-assets

  Public
  Accessory files generated downstream of approved GPMLs

  Creative Commons Zero v1.0 Universal

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 30, 2026Mar 30, 2026

• sparql-examples

  Public
  HTML

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 26, 2026Mar 26, 2026

• fdp

  Public
  Repository with the content of the WikiPathways FAIR Data Point.

  fdpfair-data-pointwikipathway

  fdpfair-data-pointwikipathway

  HTML

  •

  MIT License

  •00 forks•00 stars•44 issues•00 pull requests•Updated Mar 25, 2026Mar 25, 2026

• wikipathways-homology

  Public
  Pathway database for homology-mapped content

  Creative Commons Zero v1.0 Universal

  •00 forks•22 stars•00 issues•00 pull requests•Updated Mar 23, 2026Mar 23, 2026

• wikipathways-data-release

  Public
  Monthly data release

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•11 star•22 issues•00 pull requests•Updated Mar 15, 2026Mar 15, 2026

• pywikipathways

  Public
  Python Client Package for WikiPathways

  pythonbiologywikipathways+ 1

  pythonbiologywikipathwayspathway-enrichment-analysis

  Python

  •

  MIT License

  •55 forks•2424 stars•11 issue•00 pull requests•Updated Mar 15, 2026Mar 15, 2026

• rdf-subdomain

  Public archive
  HTML

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 21, 2026Feb 21, 2026

• wikipathways-iri-resolver

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•1010 issues•00 pull requests•Updated Feb 21, 2026Feb 21, 2026

• academy

  Public
  Organized training examples for new WikiPathways authors

  JavaScript

  •

  Creative Commons Zero v1.0 Universal

  •44 forks•22 stars•99 issues•00 pull requests•Updated Jan 25, 2026Jan 25, 2026

• sandbox-wp.gh.io

  Public
  Sandbox mirror of wikipathways.github.io

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 21, 2026Jan 21, 2026

• GPML2RDF

  Public
  GPML2RDF converter

  javasemantic-webwikipathways+ 1

  javasemantic-webwikipathwayswikipathways-gpml-files

  Java

  •

  Apache License 2.0

  •22 forks•44 stars•4242 issues•00 pull requests•Updated Jan 6, 2026Jan 6, 2026

• WikiPathwaysCurator

  Public
  Unit tests that validate the WikiPathways content and support the curation of the knowledge base.

  Java

  •

  MIT License

  •22 forks•11 star•1010 issues•00 pull requests•Updated Dec 28, 2025Dec 28, 2025

• meta-data-action

  Public
  Java

  •

  Apache License 2.0

  •33 forks•11 star•22 issues•11 pull request•Updated Dec 28, 2025Dec 28, 2025

• wikipathways-help

  Public
  11 fork•11 star•66 issues•00 pull requests•Updated Dec 8, 2025Dec 8, 2025

• rWikiPathways

  Public
  R package for WikiPathways API

  bioinformaticspathwaysdata-access+ 1

  bioinformaticspathwaysdata-accessrpackage

  HTML

  •

  MIT License

  •66 forks•1919 stars•66 issues•00 pull requests•Updated Nov 3, 2025Nov 3, 2025

• sandbox-wp-db

  Public
  Playground for new GPML processing and curation

  Shell

  •66 forks•00 stars•1010 issues•88 pull requests•Updated Nov 1, 2025Nov 1, 2025

• gpml-sync-action

  Public
  under dev

  Java

  •

  Apache License 2.0

  •00 forks•00 stars•33 issues•00 pull requests•Updated Oct 14, 2025Oct 14, 2025

• gpml-cx2-ndex

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 22, 2025Aug 22, 2025

• gpml-to-cx2

  Public
  GPML to CX2 Converter

  convertergpmlcx2

  convertergpmlcx2

  JavaScript

  •22 forks•22 stars•55 issues•00 pull requests•Updated Aug 7, 2025Aug 7, 2025

• lipidmaps-wp-curation

  Public
  Curation of lipid pathways

  Java

  •11 fork•22 stars•00 issues•00 pull requests•Updated Jul 20, 2025Jul 20, 2025

• sr24-curation

  Public
  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 20, 2025Jul 20, 2025

• pfocr-pmcfigurebot

  Public
  Query figures indexed by PubMed Central and collect metadata

  R

  •

  Creative Commons Zero v1.0 Universal

  •44 forks•11 star•00 issues•00 pull requests•Updated Jul 15, 2025Jul 15, 2025

• pyzenodo4wpdata

  Public
  A pyzenodo library for archiving versions of WikiPathways data files

  Python

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 16, 2025Jun 16, 2025