Repositories list

• openspim.github.io

  Public
  OpenSPIM web site

  CSS

  •5•3•0•0•Updated Aug 8, 2025Aug 8, 2025

• micro-OpenSPIM

  Public
  µOpenSPIM for Micro-Manager version 2

  Java

  •0•8•0•0•Updated Nov 28, 2024Nov 28, 2024

• openspim-app

  Public
  ImageJ2 adapter for OpenSPIM

  Java

  •0•0•2•0•Updated Nov 8, 2021Nov 8, 2021

• pipermail

  Public
  Archived content from retired OpenSPIM mailing list

  HTML

  •0•0•0•0•Updated Aug 17, 2020Aug 17, 2020

• openspim-parts

  Public
  3D printable parts for OpenSPIM setups

  4•1•0•0•Updated Nov 22, 2016Nov 22, 2016

• micromanager

  Public
  Our fork of micromanager

  C++

  •7•6•1•0•Updated May 12, 2016May 12, 2016

• SPIMAcquisition

  Public
  The Micro-Manager plugin to acquire images with an OpenSPIM setup

  Java

  •8•1•11•1•Updated Apr 25, 2016Apr 25, 2016

• imagej-ui-swing

  Public
  ImageJ UI for Java Swing.

  Java

  •

  Other

  •20•0•0•0•Updated Jul 9, 2014Jul 9, 2014

• fusion-pipeline

  Public
  A Fiji plugin designed to simplify the processing of OpenSPIM (or, more generally, any SPIM) data.

  Java

  •0•0•0•0•Updated Jun 5, 2014Jun 5, 2014

• 3rdpartypublic

  Public archive
  Obsolete: due to file size restrictions, this mirror cannot be updated any longer. The mirror now lives at http://fiji.sc/mmanager-3rdparty.git

  C++

  •0•0•0•0•Updated Apr 11, 2014Apr 11, 2014

• mediawiki-extensions-OggHandler

  Public archive
  OBSOLETE fork of MediaWiki OggHandler extension, once used by openspim.org

  PHP

  •0•0•0•0•Updated Feb 10, 2013Feb 10, 2013

• OME-Tiff-Test

  Public
  A test to demonstrate issues.

  Java

  •0•0•0•0•Updated Feb 7, 2013Feb 7, 2013

• Cavendish

  Public
  Cavendish MediaWiki Skin

  PHP

  •18•0•0•0•Updated Feb 5, 2013Feb 5, 2013

• bioformats

  Public
  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularl…

  Java

  •

  GNU General Public License v2.0

  •253•0•0•0•Updated Jan 31, 2013Jan 31, 2013

• msysgit

  Public
  The msysGit repository. Please post all patches to the msysGit mailing list.

  C

  •588•0•0•0•Updated Jan 17, 2013Jan 17, 2013