Repositories list

• SNT

  Public
  The framework for quantification of neuronal anatomy

  imagejimagej2fiji+ 6

  imagejimagej2fijiscijavaneuroscienceneuronsneuroanatomy-toolboxjanelianeuron-reconstruction

  Java

  •

  GNU General Public License v3.0

  •31•55•13•4•Updated Mar 9, 2026Mar 9, 2026

• pysnt

  Public
  Python wrapper for SNT, the framework for quantification of neuronal anatomy

  pythonfijiscijava+ 6

  pythonfijiscijavaneuroscienceneuronsneuroanatomy-toolboxsntneuron-reconstructionpyimagej

  Python

  •

  GNU Lesser General Public License v3.0

  •0•6•2•0•Updated Feb 25, 2026Feb 25, 2026

• snt-update-bridge

  Public
  Graceful upgrade prompt for SNT users on legacy Fiji installations.

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 16, 2026Feb 16, 2026

• misc

  Public
  Misc scripts and utilities

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 22, 2025Dec 22, 2025

• cx3d

  Public
  The Cx3D modeling framework in SciView and SNT

  imagej2neuroscienceneuroanatomy-toolbox+ 2

  imagej2neuroscienceneuroanatomy-toolboxmodeling-and-simulationsciview

  Java

  •2•5•0•1•Updated Apr 3, 2024Apr 3, 2024

• imagej.github.io

  Public
  GitHub Pages for ImageJ

  JavaScript

  •

  Other

  •176•1•0•0•Updated Jan 8, 2024Jan 8, 2024

• tubularity

  Public
  C++

  •4•0•0•0•Updated Sep 20, 2023Sep 20, 2023

• morphonets.org

  Public
  morphonets website

  CSS

  •

  Apache License 2.0

  •0•0•1•0•Updated Apr 12, 2023Apr 12, 2023

• SNTsciview

  Public
  SNT sidekick project for sciview integration

  Java

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Jul 2, 2022Jul 2, 2022

• SNTmanuscript

  Public
  Companion repository for Arshadi et al. 2020

  Python

  •

  GNU General Public License v3.0

  •2•6•0•0•Updated Feb 28, 2021Feb 28, 2021

• grneat

  Public
  Gene Regulatory Network Evolution through Augmenting Topologies (Fork)

  Java

  •

  Apache License 2.0

  •3•0•0•0•Updated Feb 28, 2021Feb 28, 2021

• i2k2020

  Public
  Companion repository for i2k2020

  Python

  •1•0•0•0•Updated Dec 1, 2020Dec 1, 2020

• GraphEditor

  Public archive
  Legacy projectL Playground for SNT's Graph Viewer GUI

  legacy-projectoutdate

  legacy-projectoutdate

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Aug 26, 2020Aug 26, 2020

• neuroanatomy

  Public
  Deployment of artifacts to Fiji's "Neuronanatomy" update site

  deploymentupdate-site

  deploymentupdate-site

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Jun 15, 2020Jun 15, 2020

• minimal-cx3d-example-project

  Public template
  A simple Maven project implementing a Cx3D-based project

  templatetemplate-project

  templatetemplate-project

  Java

  •

  Apache License 2.0

  •1•1•0•0•Updated Oct 17, 2019Oct 17, 2019