Repositories list

• WASP2

  Public
  WASP2: High-performance allele-specific analysis pipeline for next-generation sequencing data

  pythonrustbioinformatics+ 4

  pythonrustbioinformaticsgenomicsngsallele-specificpyo3

  Python

  •

  Other

  •0•8•1•0•Updated Mar 15, 2026Mar 15, 2026

• GenVarLoader

  Public
  Dataloader for applying sequence models to personalized genomics

  Python

  •

  MIT License

  •4•28•5•3•Updated Mar 9, 2026Mar 9, 2026

• genvarloader-cli

  Public
  Command line interface for GenVarLoader

  Python

  •0•0•0•0•Updated Mar 6, 2026Mar 6, 2026

• runaAI

  Public
  Dockerfile

  •0•0•0•0•Updated Jan 31, 2026Jan 31, 2026

• varCA

  Public
  Use an ensemble of variant callers to call variants from ATAC-seq data

  machine-learningsnakemakerandom-forest+ 2

  machine-learningsnakemakerandom-forestvariant-callingatac-seq-data

  Python

  •

  MIT License

  •6•23•19•1•Updated May 14, 2025May 14, 2025

• sn_cocaine_rats

  Public
  Python

  •

  MIT License

  •0•2•0•0•Updated Jan 24, 2025Jan 24, 2025

• GLiMMIRS

  Public
  GLiMMIRS: Generalized Linear Models for Measuring Interactions between Regulatory Sequences

  Jupyter Notebook

  •

  MIT License

  •1•6•0•1•Updated Aug 29, 2024Aug 29, 2024