Repositories list

• flowr

  Public
  Robust and efficient workflows using a simple language agnostic approach

  tsvworkflowcloud+ 5

  tsvworkflowcloudcranbioinformaticspipelineclusterflowr

  R

  •

  Other

  •10•92•6•0•Updated Feb 14, 2025Feb 14, 2025

• ultraseq

  Public
  R

  •1•0•2•0•Updated Sep 20, 2022Sep 20, 2022

• THetA

  Public
  Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberrations directly from high-th…

  Python

  •29•0•0•0•Updated Jul 13, 2020Jul 13, 2020

• docker_ultraseq

  Public
  Ultraseq docker image - automated build repository for docker hub and quay.io

  MIT License

  •1•0•0•0•Updated Aug 23, 2016Aug 23, 2016

• best_practices

  Public
  Best practices for writing modules and pipelines

  R

  •0•0•0•0•Updated Jun 30, 2016Jun 30, 2016

• ngsflows

  Public
  R

  •0•1•3•0•Updated May 9, 2016May 9, 2016

• flowcwl

  Public
  Python

  •0•1•0•0•Updated Dec 7, 2015Dec 7, 2015

• fastq_bam

  Public
  A simple example which processes multiple fastq files into a merged bam file

  R

  •0•0•0•0•Updated Dec 2, 2015Dec 2, 2015

• flow_creator

  Public
  R

  •0•0•0•0•Updated Nov 25, 2015Nov 25, 2015