APL BRAIN

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110 repositories

BBQS-EMBER-web
Public
BBQS EMBER Archive web app
bbqs-ember
Vue
•1•1•11•3•Updated Jan 6, 2026Jan 6, 2026
bossdb-collab-notebooks
Public
Collection of public notebooks for all projects on BossDB
Jupyter Notebook
•
Apache License 2.0
•0•1•2•0•Updated Jan 6, 2026Jan 6, 2026
BBQS-EMBER-Data-Model
Public
Core repository for the EMBER ARCHIVE
bbqs-ember
Mermaid
•2•0•8•2•Updated Jan 5, 2026Jan 5, 2026
ember-dandi-access-summaries
Public
Summaries of access stats (full downloads & streaming) for each EMBER-Dandiset on the EMBER archive.
bbqs-ember
0•0•1•0•Updated Jan 2, 2026Jan 2, 2026
dandi-archive
Public
EMBER - DANDI API server and Web app
bbqs-ember
Python
•
Apache License 2.0
•17•2•6•0•Updated Dec 31, 2025Dec 31, 2025
dandi-infrastructure
Public
A repository to collect docs/issues on DANDI project infrastructure for Ember
bbqs-ember
HCL
•
Apache License 2.0
•8•0•8•1•Updated Dec 30, 2025Dec 30, 2025
v1dd-transfer-scratch
Public
Scratch repository for v1dd transfer
Shell
•0•0•0•0•Updated Dec 30, 2025Dec 30, 2025
cloud-files
Public
Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.
Python
•
BSD 3-Clause "New" or "Revised" License
•9•0•0•0•Updated Dec 30, 2025Dec 30, 2025
BENCHMARK-Metadata
Public
Metadata specification and upload instructions for BossDB images, experiments, and annotations
1•2•5•2•Updated Dec 29, 2025Dec 29, 2025
neuvue-queue
Public
TypeScript
•
Apache License 2.0
•0•1•6•1•Updated Dec 24, 2025Dec 24, 2025
precomputed-rs
Public
Rust
•
Apache License 2.0
•0•0•1•0•Updated Dec 9, 2025Dec 9, 2025
grand-cypher
Public
Implementation of the Cypher language for searching NetworkX graphs
python neo4j graph networkx graph-database networks cypher grand
Python
•
Apache License 2.0
•15•123•20•3•Updated Dec 6, 2025Dec 6, 2025
dotmotif
Public
A performant, powerful query framework to search for network motifs
python neo4j graph networkx graph-database connectomics query-language connectome motif-discovery graph-matching
Python
•
Apache License 2.0
•10•89•4•0•Updated Dec 6, 2025Dec 6, 2025
colocar
Public
tools for sparse human annotation of three-dimensional [neuroscience] datasets
neuroscience web-application ground-truth bossdb jhuapl sparse-annotations
JavaScript
•0•4•2•49•Updated Dec 2, 2025Dec 2, 2025
neuvue-app
Public
MICrONS Proofreading App
JavaScript
•
Apache License 2.0
•2•1•14•1•Updated Nov 24, 2025Nov 24, 2025
npyjs
Public
Read numpy .npy files in JavaScript
nodejs javascript numpy 3d npy jhuapl npy-files
TypeScript
•
Apache License 2.0
•22•94•6•0•Updated Nov 20, 2025Nov 20, 2025
bossypaints
Public
Web-based dense annotation tool for connectomics
Svelte
•
Apache License 2.0
•0•1•5•0•Updated Nov 16, 2025Nov 16, 2025
open-data-registry
Public
A registry of publicly available datasets on AWS
Python
•
Apache License 2.0
•1.1k•0•0•0•Updated Nov 13, 2025Nov 13, 2025
dandi-docs
Public
EMBER-DANDI Documentation
18•0•4•3•Updated Oct 21, 2025Oct 21, 2025
motifstudio
Public
motifs subgraph-isomorphism bossdb grand-graphs grandiso
TypeScript
•
Apache License 2.0
•0•1•2•0•Updated Oct 14, 2025Oct 14, 2025
ffn
Public
Flood-Filling Networks for instance segmentation in 3d volumes.
Python
•
Apache License 2.0
•101•0•0•0•Updated Sep 26, 2025Sep 26, 2025
neuvue-client
Public
python client for neuvue-queue
Python
•
Apache License 2.0
•1•3•0•0•Updated Jul 28, 2025Jul 28, 2025
motifstudio_client
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Jun 27, 2025Jun 27, 2025
neuprint-cm
Public
Dockerfile
•1•0•0•0•Updated Jun 17, 2025Jun 17, 2025
neuPrintHTTP
Public
Implements connectomics REST interface
Go
•2•0•0•0•Updated Jun 17, 2025Jun 17, 2025
bossdb-rag-chatbot
Public
A Language Interface to the BossDB Ecosystem
Python
•
Apache License 2.0
•0•1•5•3•Updated Jun 17, 2025Jun 17, 2025
bossVR
Public
Syglass + BossDB
Python
•
Apache License 2.0
•2•1•0•0•Updated Jun 2, 2025Jun 2, 2025
substrate
Public archive
A high-speed three.js substrate for visualizing biofidelic data
visualization threejs data-science jupyter graphics jupyter-notebook data-visualization 3d substrate jhuapl
JavaScript
•
Apache License 2.0
•1•5•7•0•Updated May 28, 2025May 28, 2025
grand
Public
Your favorite Python graph libraries, scalable and interoperable. Graph databases in memory, and familiar graph APIs for cloud databases.
sql serverless graph graph-algorithms graphs neptune dynamodb networkx graph-theory graph-database
Python
•
Apache License 2.0
•8•113•6•0•Updated May 25, 2025May 25, 2025
neuvue-manage
Public
Resources and documentation to create and manage proofreading tasks on NeuVue
Jupyter Notebook
•
Apache License 2.0
•1•2•0•0•Updated Apr 7, 2025Apr 7, 2025