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    43 repositories

    • dpclust3p

      Public
      Dirichlet Process Clustering Pre-Processing Pipeline
      R
      •
      GNU General Public License v3.0
      •13•0•0•0•Updated Jun 20, 2024Jun 20, 2024

    • dpclust

      Public
      Dirichlet Process based methods for subclonal reconstruction of tumours
      R
      •
      GNU Affero General Public License v3.0
      •19•0•0•0•Updated Apr 4, 2024Apr 4, 2024

    • battenberg

      Public
      Battenberg R package for subclonal copynumber estimation
      R
      •
      GNU Affero General Public License v3.0
      •61•1•0•0•Updated Dec 12, 2022Dec 12, 2022

    • PhylogicNDT

      Public
      HTML
      •
      Other
      •46•0•0•0•Updated Feb 3, 2022Feb 3, 2022

    • mutex-tool

      Public
      Java
      •1•1•0•0•Updated Nov 10, 2021Nov 10, 2021

    • gdc-dnaseq-cwl

      Public
      CWL for GDC DNASeq workflows
      Common Workflow Language
      •
      Apache License 2.0
      •14•0•0•0•Updated Mar 26, 2021Mar 26, 2021

    • mutect2-tool

      Public
      GDC GATK3 MuTect2 docker
      Python
      •
      Apache License 2.0
      •2•0•0•0•Updated Nov 30, 2020Nov 30, 2020

    • mc3

      Public
      Python
      •
      Apache License 2.0
      •22•35•3•0•Updated Sep 28, 2020Sep 28, 2020

    • pindel-tool

      Public
      Python
      •8•1•0•1•Updated Sep 28, 2020Sep 28, 2020

    • radia-tool

      Public
      Python
      •3•1•0•0•Updated Sep 28, 2020Sep 28, 2020

    • samtools-pileup-tool

      Public
      Python
      •6•1•0•0•Updated Sep 28, 2020Sep 28, 2020

    • somaticsniper-tool

      Public
      Python
      •6•1•0•1•Updated Sep 28, 2020Sep 28, 2020

    • vcf2maf-tools

      Public
      Suite of tools from https://github.com/mskcc/vcf2maf/
      Perl
      •4•3•0•0•Updated Sep 28, 2020Sep 28, 2020

    • vcf-tools

      Public
      Python
      •2•2•0•0•Updated Sep 28, 2020Sep 28, 2020

    • mutect2-cwl

      Public
      CWL for GDC GATK3 MuTect2
      Common Workflow Language
      •
      Apache License 2.0
      •3•0•0•0•Updated Jul 23, 2020Jul 23, 2020

    • muse-tool

      Public
      Python
      •7•1•3•1•Updated Sep 23, 2019Sep 23, 2019

    • fpfilter-tool

      Public
      Perl
      •21•1•0•0•Updated Nov 5, 2018Nov 5, 2018

    • indelocator-tool

      Public
      Shell
      •2•3•0•0•Updated Nov 5, 2018Nov 5, 2018

    • markfiles-tool

      Public
      Python
      •1•1•0•0•Updated Nov 5, 2018Nov 5, 2018

    • mutect-tool

      Public
      Python
      •6•2•0•1•Updated Nov 5, 2018Nov 5, 2018

    • varscan-tool

      Public
      Python
      •5•0•0•0•Updated Nov 5, 2018Nov 5, 2018

    • tcgavcf-tool

      Public
      Python
      •7•1•0•0•Updated Nov 5, 2018Nov 5, 2018

    • pfda2dockstore

      Public
      Export precisionFDA apps to Dockstore
      Python
      •5•2•0•0•Updated Jun 25, 2018Jun 25, 2018

    • mc3-analysis

      Public
      Jupyter Notebook
      •1•1•0•0•Updated Mar 20, 2018Mar 20, 2018

    • samtools-tool

      Public
      2•1•0•0•Updated Mar 19, 2018Mar 19, 2018

    • picard-tool

      Public
      2•0•0•0•Updated Mar 2, 2018Mar 2, 2018

    • gatk4-tool

      Public
      1•1•0•0•Updated Feb 9, 2018Feb 9, 2018

    • nci-download-tool

      Public
      Common Workflow Language
      •1•0•0•0•Updated Feb 8, 2018Feb 8, 2018

    • KRCGTK

      Public
      KRC Genomics Toolkit
      Java
      •3•1•0•0•Updated Dec 27, 2017Dec 27, 2017

    • variant-effect-predictor-tool

      Public
      WDL
      •2•2•1•0•Updated Oct 17, 2017Oct 17, 2017