Repositories list

• neo-viewer

  Public
  Django/Angular/React software for graphing neural activity data (analog signals, spike trains etc.) read from Neo files.

  JavaScript

  •

  MIT License

  •11•12•15•5•Updated Mar 22, 2026Mar 22, 2026

• neuralensemble-docker

  Public
  Docker images for neuroscience

  Dockerfile

  •

  MIT License

  •7•13•3•1•Updated Mar 17, 2026Mar 17, 2026

• python-neo

  Public
  Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •270•358•134•26•Updated Mar 13, 2026Mar 13, 2026

• ephyviewer

  Public
  Simple viewers for ephys signals, events, video and more

  Python

  •

  MIT License

  •15•58•13•3•Updated Mar 13, 2026Mar 13, 2026

• elephant

  Public
  Elephant is the Electrophysiology Analysis Toolkit

  pythonstatisticsneuroscience+ 4

  pythonstatisticsneurosciencedata-analysiselectrophysiologyhacktoberfestneurophysiology

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •96•237•20•17•Updated Mar 8, 2026Mar 8, 2026

• lazyarray

  Public
  lazyarray is a Python package that provides a lazily-evaluated numerical array class, larray, based on and compatible with NumPy arrays.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •10•22•3•0•Updated Jan 21, 2026Jan 21, 2026

• libNeuroML

  Public
  This package provides Python libNeuroML, for working with neuronal models specified in NeuroML

  pythonneuromlneuronal-models

  pythonneuromlneuronal-models

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •33•45•11•4•Updated Jan 8, 2026Jan 8, 2026

• neuroConstruct

  Public
  neuroConstruct: biophysically detailed neuronal modelling in 3D

  Python

  •

  GNU General Public License v2.0

  •25•52•33•2•Updated Nov 25, 2025Nov 25, 2025

• cobrawap

  Public
  Collaborative Brain Wave Analysis Pipeline (Cobrawap)

  Python

  •

  GNU General Public License v3.0

  •20•26•19•11•Updated Sep 25, 2025Sep 25, 2025

• PyNN

  Public
  A Python package for simulator-independent specification of neuronal network models.

  Python

  •

  Other

  •136•304•113•21•Updated Sep 23, 2025Sep 23, 2025

• neuralensemble.github.io

  Public
  Source for the neuralensemble.org website

  HTML

  •0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

• neurotune

  Public
  Package for fitting/optimization of NeuroML models

  pythoncomputational-neuroscienceevolutionary-algorithm+ 2

  pythoncomputational-neuroscienceevolutionary-algorithmmodel-fittingneuroml

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •11•18•1•1•Updated Apr 10, 2025Apr 10, 2025

• pyelectro

  Public
  Analysis of electrophysiology in Python

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3•8•2•0•Updated Apr 10, 2025Apr 10, 2025

• pypl2

  Public
  Python

  •1•0•0•0•Updated Oct 29, 2024Oct 29, 2024

• MotionClouds

  Public
  Synthesizing moving textures with parameterized features

  motion-detectionperceptiontexture-synthesis+ 5

  motion-detectionperceptiontexture-synthesisstimulusmotion-cloudstimulimotion-perceptionrandom-textures

  Python

  •5•15•1•0•Updated Sep 26, 2022Sep 26, 2022

• Networks_SIG

  Public
  INCF SIG on Standardised Representations of Network Structures

  HTML

  •5•7•8•0•Updated Sep 13, 2022Sep 13, 2022

• spack

  Public
  A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

  Python

  •

  Other

  •2.4k•0•0•0•Updated Apr 28, 2022Apr 28, 2022

• python-quantities

  Public
  Quantities package for the python programming language

  Python

  •78•0•0•1•Updated Aug 23, 2021Aug 23, 2021

• motionclouds_website

  Public
  Website for "Model-based stimulus synthesis of natural-like random textures for the study of motion perception"

  neurosciencecomputational-neurosciencevision+ 1

  neurosciencecomputational-neurosciencevisionnatural-images

  Jupyter Notebook

  •2•4•0•0•Updated Feb 24, 2021Feb 24, 2021

• SimulationDataFormats

  Public
  C

  •4•2•0•0•Updated Feb 24, 2021Feb 24, 2021

• pype9

  Public
  Python pipelines to simulate and manipulate neuronal models, and networks thereof, described in NineML (http://nineml.net)

  Python

  •

  MIT License

  •7•3•31•0•Updated Apr 12, 2020Apr 12, 2020

• parameters

  Public
  Management of large, hierarchical parameter sets for modelling and simulation

  Python

  •

  GNU General Public License v2.0

  •11•5•5•0•Updated Mar 30, 2020Mar 30, 2020

• NeuroTools

  Public
  NeuroTools is a collection of tools for representing and anlyzing neuroscientific data.

  Python

  •

  GNU General Public License v2.0

  •10•32•0•0•Updated Mar 20, 2020Mar 20, 2020

• NeuroinformaticsTutorial

  Public
  A tutorial on neuroinformatics resources for computational modellers

  Python

  •20•70•4•1•Updated Sep 17, 2019Sep 17, 2019

• nipy-artwork

  Public
  Fliers, images, etc

  Other

  •15•0•0•0•Updated Jan 21, 2013Jan 21, 2013