Skip to content

@LANL-Bioinformatics LANL-Bioinformatics

Change the repository type filter

All

    Repositories list

    35 repositories

    • nasa-edge

      Public
      JavaScript
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Mar 24, 2026Mar 24, 2026

    • edge-v3

      Public
      JavaScript
      •
      GNU General Public License v3.0
      •5•0•5•4•Updated Mar 24, 2026Mar 24, 2026

    • wastewater-edge

      Public
      JavaScript
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Mar 24, 2026Mar 24, 2026

    • edge-core

      Public
      JavaScript
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Mar 24, 2026Mar 24, 2026

    • EDGE

      Public
      EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
      bioinformaticsgenomics
      bioinformaticsgenomics
      Perl
      •
      GNU General Public License v3.0
      •32•78•5•0•Updated Mar 19, 2026Mar 19, 2026

    • microbiome-edge

      Public
      JavaScript
      •0•0•0•0•Updated Mar 18, 2026Mar 18, 2026

    • NASA_EDGEv3

      Public
      JavaScript
      •0•0•0•0•Updated Mar 3, 2026Mar 3, 2026

    • nmdc-edge

      Public
      Web-based interface to the NMDC EDGE platform
      mongoexpressnode
      mongoexpressnodereactjscromwell
      JavaScript
      •2•4•73•3•Updated Feb 23, 2026Feb 23, 2026

    • EDGEv3

      Public
      Perl
      •
      GNU General Public License v3.0
      •2•0•2•2•Updated Feb 23, 2026Feb 23, 2026

    • phame-app

      Public
      JavaScript
      •
      Other
      •0•0•2•2•Updated Feb 20, 2026Feb 20, 2026

    • ReadbasedAnalysis

      Public
      The pipeline takes in sequencing files (single- or paired-end) and profiles them using multiple taxonomic classification tools
      HTML
      •9•0•0•0•Updated Feb 19, 2026Feb 19, 2026

    • FaQCs

      Public
      Quality Control of Next Generation Sequencing Data
      C++
      •
      GNU General Public License v3.0
      •11•21•1•0•Updated Jun 16, 2025Jun 16, 2025

    • EDGEv2-doc

      Public
      0•0•0•0•Updated Apr 18, 2025Apr 18, 2025

    • magic_castle

      Public
      Terraform modules to replicate the HPC user experience in the cloud
      HCL
      •
      MIT License
      •44•0•0•0•Updated Jan 24, 2025Jan 24, 2025

    • NASA_GeneLab_workflows

      Public
      WDL
      •0•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • synthetic_transkingdom_data

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Mar 21, 2024Mar 21, 2024

    • normalCowboy

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Mar 13, 2024Mar 13, 2024

    • PhaME

      Public
      Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to construct a phylogenetic tree…
      Perl
      •
      GNU General Public License v3.0
      •18•33•14•1•Updated Nov 28, 2023Nov 28, 2023

    • ramifi

      Public
      Recombinant And Mixed-Infection Finder for SARS-CoV-2
      HTML
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Jan 25, 2023Jan 25, 2023

    • nmdc-schema

      Public
      This repository contains the LinkML specification for the NMDC schema and the artifacts generated by LinkML.
      Python
      •
      Creative Commons Zero v1.0 Universal
      •10•0•0•0•Updated Feb 11, 2022Feb 11, 2022

    • Lo-et-al-Bioinformatics-EC-19-data

      Public
      0•0•0•0•Updated Jan 14, 2022Jan 14, 2022

    • assay_validation

      Public
      This is a web-app and workflow for computationally screening PCR-based assays
      Python
      •
      GNU General Public License v3.0
      •1•4•1•0•Updated Nov 1, 2021Nov 1, 2021

    • KWAGE

      Public
      Ultra-fast, Bloom filter-based sequence search
      C++
      •
      Other
      •2•5•0•1•Updated Jun 23, 2021Jun 23, 2021

    • kbase-gottcha2

      Public
      GOTTCHA2 KBase app
      Python
      •
      MIT License
      •2•0•1•0•Updated May 26, 2021May 26, 2021

    • DETEQT

      Public
      Diagnostic targeted sequencing adjudication
      Perl
      •
      Other
      •1•0•0•0•Updated Apr 26, 2021Apr 26, 2021

    • PCRamp

      Public
      Software for designing multiplex-compatible, PCR-based enrichment assays
      C++
      •
      Other
      •0•5•1•0•Updated Jan 26, 2021Jan 26, 2021

    • kbase-metaphlan2

      Public
      KBase wrapper for MetaPhAn2
      Python
      •
      MIT License
      •0•0•0•1•Updated Nov 25, 2020Nov 25, 2020

    • piret

      Public
      Pythonic PiReT
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Oct 21, 2020Oct 21, 2020

    • gottcha2-custom-db

      Public
      Generates custom GOTTCHA2 database from a set of genomes
      0•0•0•0•Updated Aug 31, 2020Aug 31, 2020

    • metamer

      Public
      Cluster shotgun sequencing samples
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Oct 7, 2019Oct 7, 2019