Repositories list

• CBAN

  Public
  releases of beast2 packaged zip files in a reliable location

  package-managerbeast2

  package-managerbeast2

  JavaScript

  •22•8•1•0•Updated Apr 2, 2026Apr 2, 2026

• beast3

  Public
  Strong typing and modern build and module infrastructure for BEAST

  Java

  •

  GNU Lesser General Public License v2.1

  •1•4•33•1•Updated Apr 2, 2026Apr 2, 2026

• CCD

  Public

  CompEvol/CCD’s past year of commit activity
  Conditional Clade Distribution package for BEAST 2

  Java

  •3•4•0•1•Updated Apr 1, 2026Apr 1, 2026

• beast2-site

  Public
  beast2 web development site

  jekyllbeast2

  jekyllbeast2

  HTML

  •8•2•3•0•Updated Mar 30, 2026Mar 30, 2026

• beast-package-skeleton

  Public
  A skeleton beast3 package

  Java

  •0•0•0•0•Updated Mar 27, 2026Mar 27, 2026

• sampled-ancestors

  Public
  This BEAST2 package provides MCMC proposals and post-processing tools for sampling trees containing sampled ancestors

  javabayesian-inferencemcmc+ 1

  javabayesian-inferencemcmcbeast2

  Java

  •

  GNU General Public License v3.0

  •12•8•6•3•Updated Mar 27, 2026Mar 27, 2026

• morph-models

  Public
  Models for dealing with morphological data

  morphological-databeast2

  morphological-databeast2

  Java

  •

  GNU Lesser General Public License v2.1

  •10•7•5•1•Updated Mar 27, 2026Mar 27, 2026

• beast2

  Public
  Bayesian Evolutionary Analysis by Sampling Trees

  javaevolutionbeast+ 3

  javaevolutionbeastphylogeneticsbayesian-inferencemcmc

  Java

  •

  GNU Lesser General Public License v2.1

  •84•270•198•0•Updated Mar 27, 2026Mar 27, 2026

• CCD-Research

  Public
  Information, scripts and data of CCD research papers

  Python

  •0•0•0•0•Updated Mar 15, 2026Mar 15, 2026

• TreeESSExtra

  Public
  Probabilistic tree ESS estimators based expected difference of clade frequencies.

  Java

  •0•0•0•0•Updated Mar 3, 2026Mar 3, 2026

• BeastFX3

  Public
  Dockerfile

  •

  GNU Lesser General Public License v2.1

  •0•1•0•0•Updated Feb 22, 2026Feb 22, 2026

• Waiheke2026

  Public
  The 29th Annual New Zealand Phylogenomics Meeting

  0•0•0•0•Updated Feb 5, 2026Feb 5, 2026

• BeastFX

  Public
  GUIs for BEAST using Java FX to make things more pretty.

  Java

  •

  GNU Lesser General Public License v2.1

  •3•6•21•0•Updated Nov 20, 2025Nov 20, 2025

• beast2lang

  Public
  A declarative statistical modelling language that uses fully-resolved BEAST2 class names

  Java

  •0•1•4•0•Updated Aug 21, 2025Aug 21, 2025

• beastlauncher

  Public
  A general launcher utility for any main that wants to depend on local install of BEAST2 classes

  Shell

  •0•0•0•0•Updated May 1, 2025May 1, 2025

• benchmark

  Public
  BEAST benchmarking data

  Perl

  •1•1•1•0•Updated Jan 5, 2023Jan 5, 2023

• BEAST.app

  Public
  BEAST 2.7 package containing applications

  Java

  •0•0•0•0•Updated Oct 25, 2022Oct 25, 2022

• packages

  Public
  Released BEAST 2 packages

  2•0•0•0•Updated Aug 11, 2022Aug 11, 2022

• Covid4Island

  Public
  GNU General Public License v3.0

  •1•0•0•0•Updated Jun 21, 2021Jun 21, 2021

• beastshell

  Public
  BeanShell scripting for BEAST2

  Java

  •

  GNU Lesser General Public License v2.1

  •1•0•1•0•Updated Mar 22, 2018Mar 22, 2018

• TTBSP

  Public
  Materials for Taming the BEAST in the South Pacific

  TeX

  •0•0•0•0•Updated Jan 10, 2017Jan 10, 2017

• beast1to2

  Public
  Convert BEAST 1 XML for BEAST 2

  Java

  •0•0•1•0•Updated Dec 7, 2016Dec 7, 2016

• testXXX

  Public
  0•0•0•0•Updated Dec 4, 2016Dec 4, 2016

• NZGOT

  Public
  The toolkit to analyse various types of data collected from New Zealand Genomic Observatory project

  javabioinformatics

  javabioinformatics

  Java

  •

  GNU General Public License v2.0

  •2•3•0•0•Updated Aug 8, 2016Aug 8, 2016

• beast2report

  Public
  Test report

  HTML

  •0•0•0•0•Updated Jun 1, 2016Jun 1, 2016

• VCF2Patterns

  Public
  Python

  •0•0•0•0•Updated Apr 19, 2016Apr 19, 2016

• phylodynamics

  Public
  For joint inference of genetic and epidemiological parameters. Repository has now moved to:

  0•1•0•0•Updated Oct 5, 2015Oct 5, 2015

• compevol-slides

  Public
  A repository of presentation materials for giving talks on computational evolution.

  0•0•0•0•Updated May 21, 2013May 21, 2013