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@CancerCollaboratory Cancer Genome Collaboratory

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    27 repositories

    • website

      Public
      This is a website replacement project for Cancer Genome Collaboratory
      JavaScript
      •
      MIT License
      •0•0•3•0•Updated Mar 25, 2024Mar 25, 2024

    • dockstore-tool-bamstats

      Public archive
      A repo for the BAMStats command, used as the tutorial for Dockstore
      dockerdockstorebamstats
      dockerdockstorebamstats
      Common Workflow Language
      •
      Apache License 2.0
      •72•8•0•0•Updated Aug 16, 2022Aug 16, 2022

    • dockstore-tool-samtools-view

      Public
      Adapted from https://github.com/common-workflow-language/workflows
      3•0•0•0•Updated Jun 1, 2020Jun 1, 2020

    • dockstore-tool-liftover

      Public
      From https://github.com/common-workflow-language/workflows
      1•0•0•0•Updated Feb 21, 2020Feb 21, 2020

    • infrastructure

      Public
      Public repository for Collaboratory Infrastructure
      Shell
      •
      GNU General Public License v3.0
      •3•7•0•0•Updated Oct 16, 2018Oct 16, 2018

    • dockstore-tool-bedgraph-bigwig

      Public
      From https://github.com/common-workflow-language/workflows
      2•0•0•0•Updated Apr 6, 2018Apr 6, 2018

    • dockstore-tool-snpeff

      Public
      Example tool at dockstore.org
      Common Workflow Language
      •0•0•0•0•Updated Apr 6, 2018Apr 6, 2018

    • k8s-on-openstack

      Public
      An opinionated way to deploy a Kubernetes cluster on top of an OpenStack cloud.
      Shell
      •
      Apache License 2.0
      •49•0•0•0•Updated Sep 25, 2017Sep 25, 2017

    • webstatus-update

      Public
      Provide status updates to the web site by uploading a JSON file over scp.
      Python
      •0•0•0•0•Updated Jun 6, 2017Jun 6, 2017

    • dockstore-tool-kallisto

      Public
      Example tool at dockstore.org
      Shell
      •0•0•0•0•Updated Sep 15, 2016Sep 15, 2016

    • dockstore-tool-rnaseqc

      Public
      Example tool at dockstore.org
      Shell
      •0•0•0•0•Updated Sep 15, 2016Sep 15, 2016

    • dockstore-tool-samtools-rmdup

      Public
      Adapted from https://github.com/common-workflow-language/workflows
      0•0•0•0•Updated Sep 15, 2016Sep 15, 2016

    • dockstore-tool-samtools-sort

      Public
      Adapted from https://github.com/common-workflow-language/workflows
      1•0•0•0•Updated Sep 15, 2016Sep 15, 2016

    • dockstore-tool-bwa-samse

      Public
      From https://github.com/common-workflow-language/workflows
      0•0•0•0•Updated Sep 15, 2016Sep 15, 2016

    • dockstore-tool-bwa-aln

      Public
      Adapted from https://github.com/common-workflow-language/workflows
      0•0•0•0•Updated Sep 15, 2016Sep 15, 2016

    • dockstore-tool-bedtools-genomecov

      Public
      From https://github.com/common-workflow-language/workflows
      0•0•0•0•Updated Sep 14, 2016Sep 14, 2016

    • dockstore-tool-bwa-mem

      Public
      From https://github.com/common-workflow-language/workflows
      2•0•0•0•Updated Sep 14, 2016Sep 14, 2016

    • dockstore-tool-samtools-index

      Public
      From https://github.com/common-workflow-language/workflows
      0•0•0•0•Updated Sep 14, 2016Sep 14, 2016

    • dockstore-tool-linux-sort

      Public
      From https://github.com/common-workflow-language/workflows
      2•0•0•0•Updated Sep 14, 2016Sep 14, 2016

    • dockstore-tool-ubu-sam-filter

      Public
      Example tool at dockstore.org
      0•0•0•0•Updated Aug 11, 2016Aug 11, 2016

    • dockstore-tool-ubu-sam-summary

      Public
      Example tool at dockstore.org
      0•0•0•0•Updated Aug 11, 2016Aug 11, 2016

    • dockstore-tool-ubu-sam-diff

      Public
      Example tool at dockstore.org
      0•0•0•0•Updated Aug 11, 2016Aug 11, 2016

    • dockstore-whalesay

      Public
      An example repo for dockstore sample workflows
      Apache License 2.0
      •4•0•0•0•Updated Apr 4, 2016Apr 4, 2016

    • quiddity-schemas

      Public
      Schemas for development
      0•0•0•0•Updated Mar 28, 2016Mar 28, 2016

    • manifest-to-consonance

      Public
      A tool that converts from a DCC Portal manifest file to a workflow order in the Consonance system.
      Perl
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 10, 2015Nov 10, 2015

    • cli

      Public
      Shell
      •0•1•0•0•Updated Oct 9, 2015Oct 9, 2015

    • ceph

      Public
      Ceph related info.
      Python
      •0•0•0•0•Updated Mar 27, 2015Mar 27, 2015