Add clustermap

[habibrehman2002]

Describe your changes

Checklist before requesting a review

• I have performed a self-review of my code

• Check the correct box. Does this PR contain:

  • Breaking changes
  • New functionality
  • Major changes
  • Minor changes
  • Bug fixes

• Proposed changes are described in the CHANGELOG.md

• CI Tests succeed and look good!

[rcannood]

Hello @habibrehman2002 ! Thanks for contributing!

It seems like one of the tests is failing because it can't find ClusterMap.

Probably something is going wrong with the installation.

Could you run viash test src/methods_transcript_assignment/clustermap_transcript_assignment/config.vsh.yaml and fix any issues that show up?

Thanks!

[habibrehman2002]

Hello @habibrehman2002 ! Thanks for contributing!

It seems like one of the tests is failing because it can't find ClusterMap.

Probably something is going wrong with the installation.

Could you run viash test src/methods_transcript_assignment/clustermap_transcript_assignment/config.vsh.yaml and fix any issues that show up?

Thanks!

Hi @rcannood , I've been running into a lot of issues installing ClusterMap using docker, even though it works fine when using the native environment. It seems like ClusterMap gets cloned from git (and installed since you can see the version number), but for some reason is not able to be loaded/imported? I've discussed it with @LouisK92 and we might try creating a custom docker container for it and see if that works (rather than installing using the config.vsh.yaml functionality).

[LouisK92]

@rcannood How can I adjust the memory for the gh action viash tests? I think the current test failure comes from a memory error (if I understood correctly) - mem seems to be set to 14GB

Locally the test runs through