Refactoring the Snippet Library

[tkphd]

This PR captures progress toward converting the Snippet Library and config files to work effectively with the Workbench.

Snippetized Workbenched version of the site -- currently for HPC Carpentry's MagicCastle cluster and a deliberately-corrupted Ghastly Mistakes variant to make testing easier.

Remaining issues (Documenting when to use a snippet) will be undertaken after migration to the Carpentries Incubator.

[github-actions]

Thank you!

Thank you for your pull request 😃

🤖 This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

• 🎯 correct output
• 🖼️ correct figures
• ❓ new warnings
• ‼️ new errors

Rendered Changes

🔍 Inspect the changes: https://github.com/ocaisa/probable-pancake/compare/md-outputs..md-outputs-PR-4

The following changes were observed in the rendered markdown documents:

 10-hpc-intro.md                                    |  56 +-
 11-connecting.md                                   |  44 +-
 12-cluster.md                                      |  20 +-
 13-scheduler.md                                    |  50 +-
 14-environment-variables.md                        |   6 +-
 15-modules.md                                      |  82 +-
 16-transferring-files.md                           |   4 +-
 17-parallel.md                                     |  67 +-
 18-resources.md                                    |  11 +-
 discuss.md (gone)                                  | 156 ----
 .../Ghastly_Mistakes/_config_options.yml (new)     |  66 ++
 .../Ghastly_Mistakes/cluster/queue-info.Rmd (new)  |   6 +
 .../cluster/specific-node-info.Rmd (new)           |  12 +
 .../modules/available-modules.Rmd (new)            |  24 +
 .../modules/missing-python.Rmd (new)               |  30 +
 .../modules/module-load-python.Rmd (new)           |   8 +
 .../modules/python-executable-dir.Rmd (new)        |  19 +
 .../modules/software-dependencies.Rmd (new)        |  79 ++
 .../parallel/eight-tasks.Rmd (new)                 |  58 ++
 .../Ghastly_Mistakes/parallel/four-tasks.Rmd (new) |  56 ++
 .../Ghastly_Mistakes/parallel/one-task.Rmd (new)   |  22 +
 .../resources/account-history.Rmd (new)            |  13 +
 .../scheduler/basic-job-script.Rmd (new)           |   3 +
 .../scheduler/basic-job-status.Rmd (new)           |   8 +
 .../scheduler/job-with-name-status.Rmd (new)       |   4 +
 .../scheduler/option-flags-list.Rmd (new)          |  15 +
 .../scheduler/print-sched-variables.Rmd (new)      |  32 +
 .../scheduler/runtime-exceeded-job.Rmd (new)       |   3 +
 .../scheduler/runtime-exceeded-output.Rmd (new)    |   5 +
 .../scheduler/terminate-job-begin.Rmd (new)        |   6 +
 .../scheduler/terminate-job-cancel.Rmd (new)       |   3 +
 .../scheduler/terminate-multiple-jobs.Rmd (new)    |  29 +
 .../scheduler/using-nodes-interactively.Rmd (new)  |  66 ++
 .../HPCC_MagicCastle_slurm/_config_options.yml     |   9 +-
 .../modules/available-modules.Rmd (new)            |  24 +
 .../modules/missing-python.Rmd (new)               |  30 +
 .../modules/module-load-python.Rmd (new)           |   8 +
 .../modules/python-executable-dir.Rmd (new)        |  19 +
 .../modules/software-dependencies.Rmd (new)        |  79 ++
 .../parallel/eight-tasks.Rmd (new)                 |  58 ++
 .../parallel/four-tasks.Rmd (new)                  |  56 ++
 .../parallel/one-task.Rmd (new)                    |  22 +
 .../resources/account-history.Rmd (new)            |  13 +
 learner-prerequisites.md (gone)                    |  83 --
 lesson_config.yaml                                 |  52 +-
 load_config.R                                      |  34 +-
 md5sum.txt                                         |  44 +-
 reference.md (gone)                                | 184 ----
 renv.lock (gone)                                   | 986 ---------------------
 49 files changed, 1097 insertions(+), 1667 deletions(-)

What does this mean?

If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible.

This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

⏱️ Updated at 2025-11-05 21:50:03 +0000

[ocaisa]

Waiting for the nod from you to proceed with this @tkphd

[ocaisa]

Just clicking throught that took ages, let's see it rendered!

[tkphd]

Thank you for the review!!!