Analysis: UBERON submucosal gland subclasses missing CL term links

[Copilot]

Identified UBERON anatomical terms for submucosal gland subclasses lacking cell type associations in the Cell Ontology via part_of relationships.

Analysis Performed

• Queried OLS4 for UBERON:0011148 (submucosal gland) descendants
• Cross-referenced 5 subclasses against cl-edit.owl for part_of (BFO_0000050) relationships to CL terms

Results

Missing CL links:

• UBERON:0008989 (submucosal esophageal gland) - 0 CL term references

Has CL links:

• UBERON:8410077 (airway submucosal gland) - 4 references
• UBERON:0001212 (duodenal gland) - 1 reference
• UBERON:8410043 (bronchus submucosal gland) - 3 references
• UBERON:0005203 (trachea gland) - 2 references

This indicates cell types specific to submucosal esophageal glands are either unrepresented or lack anatomical localization in CL.

Original prompt

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This section details on the original issue you should resolve

<issue_title>testing OLS4 MCP</issue_title>
<issue_description>Find uberon terms for subclasses of submucosal gland. Then check which ones do not have a link to a CL term (via part_of) in the cell ontology.</issue_description>

<agent_instructions>Use OLS4 MCP</agent_instructions>

Comments on the Issue (you are @copilot in this section)

• Fixes testing OLS4 MCP #3423

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[aleixpuigb]

VSCode might get a bit more information, but same results: