Add definitions to terms for neurons that lack them

[AvolaAmg]

Fixes #2342

[gouttegd]

No issues with the definitions, but CL:0000109 should not be purely removed from the ontology, it must be properly obsoleted instead.

[gouttegd]

Is that term removed because it “should be a synonym of noradrenergic neuron” (as stated in this comment)?

Terms should never be entirely removed like that. They should be obsoleted instead – kept around, but clearly marked as obsolete with a owl:deprecated annotation.

[gouttegd]

Has this file been modified with Protégé?

This file is automatically generated from the mappings between CL and foreign ontologies. It should not be manually edited.

[github-actions]

This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR editor will be allowed to proceed with merging without explicit approval, should they wish to do so.

[dosumis]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-04-28/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-04-28/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

CNS long range interneuron http://purl.obolibrary.org/obo/CL_0000410

Added

• CNS long range interneuron IAO_0000115 "A type of interneuron with its soma located in a cerebral cortex. This neuronal type extends their axons to remote cortical and subcortical areas."

  • hasDbXref "PMID:35392440"

  • hasDbXref "PMID:34322002"

CNS short range interneuron http://purl.obolibrary.org/obo/CL_0000406

Added

• CNS short range interneuron IAO_0000115 "A type of interneuron with its soma located in a central nervous system. This neuronal type extends their axons locally within the same circuit."
  • hasDbXref "PMID:23394773"

Mauthner neuron http://purl.obolibrary.org/obo/CL_0000246

Added

• Mauthner neuron IAO_0000115 "A reticulospinal neuron with soma location in the hindbrain of fish and amphibians. This neuron type is responsible for the rapid escape response known as C-start escape."

  • hasDbXref "PMID:11163687"

• Mauthner neuron SubClassOf reticulospinal neuron

R1 photoreceptor cell http://purl.obolibrary.org/obo/CL_0000687

Added

• R1 photoreceptor cell IAO_0000115 "A photoreceptor cell in the Drosophila visual system. The R1 photoreceptor is capable of detecting UV light and blue-green light with its sensitivity peaking at ∼360 nm and ∼490 nm. This photoreceptor expresses the opsin Rh1 which is responsible for light detection. This photoreceptor cell is arranged in the outer edges of the Drosophila ommatidia and it forms a trapezoidal pattern together with other photoreceptors. This photoreceptor innervates the laminate in the Drosophila optic lobe."

  • hasDbXref "PMID:19623243"

  • hasDbXref "PMID:34003117"

  • hasDbXref "PMID:31207209"

  • hasDbXref "PMID:37128740"

• R1 photoreceptor cell IAO_0000028 "R1"

  • hasDbXref "PMID:37128740"

R2 photoreceptor cell http://purl.obolibrary.org/obo/CL_0000690

Added

• R2 photoreceptor cell IAO_0000115 "A photoreceptor cell in the Drosophila visual system. The R2 photoreceptor is capable of detecting UV light and blue-green light with its sensitivity peaking at ∼360 nm and ∼490 nm. This photoreceptor expresses the opsin Rh1 which is responsible for light detection. This photoreceptor cell is arranged in the outer edges of the Drosophila ommatidia and it forms a trapezoidal pattern together with other photoreceptors. This photoreceptor innervates the laminate in the Drosophila optic lobe."

  • hasDbXref "PMID:19623243"

  • hasDbXref "PMID:34003117"

  • hasDbXref "PMID:31207209"

  • hasDbXref "PMID:37128740"

• R2 photoreceptor cell IAO_0000028 "R2"

  • hasDbXref "PMID:37128740"

R3 photoreceptor cell http://purl.obolibrary.org/obo/CL_0000694

Added

• R3 photoreceptor cell IAO_0000028 "R3"

  • hasDbXref "PMID:37128740"

• R3 photoreceptor cell IAO_0000115 "A photoreceptor cell in the Drosophila visual system. The R3 photoreceptor is capable of detecting UV light and blue-green light with its sensitivity peaking at ∼360 nm and ∼490 nm. This photoreceptor expresses the opsin Rh1 which is responsible for light detection. This photoreceptor cell is arranged in the outer edges of the Drosophila ommatidia and it forms a trapezoidal pattern together with other photoreceptors. This photoreceptor innervates the laminate in the Drosophila optic lobe."

  • hasDbXref "PMID:19623243"

  • hasDbXref "PMID:34003117"

  • hasDbXref "PMID:31207209"

  • hasDbXref "PMID:37128740"

R4 photoreceptor cell http://purl.obolibrary.org/obo/CL_0000697

Added

• R4 photoreceptor cell IAO_0000115 "A photoreceptor cell in the Drosophila visual system. The R4 photoreceptor is capable of detecting UV light and blue-green light with its sensitivity peaking at ∼360 nm and ∼490 nm. This photoreceptor expresses the opsin Rh1 which is responsible for light detection. This photoreceptor cell is arranged in the outer edges of the Drosophila ommatidia and it forms a trapezoidal pattern together with other photoreceptors. This photoreceptor innervates the laminate in the Drosophila optic lobe."

  • hasDbXref "PMID:19623243"

  • hasDbXref "PMID:34003117"

  • hasDbXref "PMID:31207209"

  • hasDbXref "PMID:37128740"

• R4 photoreceptor cell IAO_0000028 "R4"

  • hasDbXref "PMID:37128740"

R5 photoreceptor cell http://purl.obolibrary.org/obo/CL_0000702

Added

• R5 photoreceptor cell IAO_0000115 "A photoreceptor cell in the Drosophila visual system. The R5 photoreceptor is capable of detecting UV light and blue-green light with its sensitivity peaking at ∼360 nm and ∼490 nm. This photoreceptor expresses the opsin Rh1 which is responsible for light detection. This photoreceptor cell is arranged in the outer edges of the Drosophila ommatidia and it forms a trapezoidal pattern together with other photoreceptors. This photoreceptor innervates the laminate in the Drosophila optic lobe."

  • hasDbXref "PMID:19623243"

  • hasDbXref "PMID:34003117"

  • hasDbXref "PMID:31207209"

  • hasDbXref "PMID:37128740"

• R5 photoreceptor cell IAO_0000028 "R5"

  • hasDbXref "PMID:37128740"

R6 photoreceptor cell http://purl.obolibrary.org/obo/CL_0000705

Added

• R6 photoreceptor cell IAO_0000115 "A photoreceptor cell in the Drosophila visual system. The R6 photoreceptor is capable of detecting UV light and blue-green light with its sensitivity peaking at ∼360 nm and ∼490 nm. This photoreceptor expresses the opsin Rh1 which is responsible for light detection. This photoreceptor cell is arranged in the outer edges of the Drosophila ommatidia and it forms a trapezoidal pattern together with other photoreceptors. This photoreceptor innervates the laminate in the Drosophila optic lobe."

  • hasDbXref "PMID:19623243"

  • hasDbXref "PMID:34003117"

  • hasDbXref "PMID:31207209"

  • hasDbXref "PMID:37128740"

• R6 photoreceptor cell IAO_0000028 "R6"

  • hasDbXref "PMID:37128740"

• R6 photoreceptor cell SubClassOf CNS neuron (sensu Nematoda and Protostomia)

R7 photoreceptor cell http://purl.obolibrary.org/obo/CL_0000707

Added

• R7 photoreceptor cell IAO_0000028 "R7"

  • hasDbXref "PMID:37128740"

• R7 photoreceptor cell IAO_0000115 "A photoreceptor cell in the Drosophila visual system. The R7 photoreceptor cell is a capable of detecting UV light at peak of 330nm wavelength, this cell type expresses the opsin gene Rh3 or Rh4 and it is located at the center of the drosophila ommatidia. Photoreceptor R7 innervates the M6 layer in the medulla in Drosophila the optic lobe."

  • hasDbXref "PMID:19623243"

  • hasDbXref "PMID:34003117"

  • hasDbXref "PMID:31207209"

  • hasDbXref "PMID:37128740"

• R7 photoreceptor cell SubClassOf CNS neuron (sensu Nematoda and Protostomia)

R8 photoreceptor cell http://purl.obolibrary.org/obo/CL_0000709

Added

• R8 photoreceptor cell IAO_0000115 "A photoreceptor cell in the Drosophila visual system. The R8 photoreceptor is capable of detecting UV light . This photoreceptor expresses the opsin Rh5 or Rh6 which detect light at their peak of 435 nm and 600 nm. This photoreceptor cell is arranged in the center of the Drosophila ommatidia and it innervates the medulla in the Drosophila optic lobe."

  • hasDbXref "PMID:19623243"

  • hasDbXref "PMID:34003117"

  • hasDbXref "PMID:31207209"

  • hasDbXref "PMID:37128740"

• R8 photoreceptor cell IAO_0000028 "R8"

acceleration receptive cell http://purl.obolibrary.org/obo/CL_0000204

Added

• acceleration receptive cell IAO_0000115 "A type of neuronal receptor cells that is responsive to changes of speed over time in a central nervous system."

  • hasDbXref "PMID:15342736"

  • hasDbXref "PMID:18831600"

• acceleration receptive cell comment "These neurons have been widely studied in pigeon brains. They were found in the pretectal nucleus in the brain of pigeons and they are characterised by plates-shaped firing rates sensitive to speed."

  • hasDbXref "PMID:15342736"

  • hasDbXref "PMID:18831600"

adrenergic neuron http://purl.obolibrary.org/obo/CL_0000109

Removed

• adrenergic neuron hasDbXref "MESH:D059331"

• adrenergic neuron label "adrenergic neuron"

• adrenergic neuron hasDbXref "ZFA:0009061"

  • mapping_justification UnspecifiedMatching

• Class: adrenergic neuron

• adrenergic neuron SubClassOf catecholaminergic neuron

noradrenergic neuron http://purl.obolibrary.org/obo/CL_0008025

Added

• noradrenergic neuron hasDbXref "MESH:D059331"

• noradrenergic neuron hasRelatedSynonym "adrenergic neuron"

• noradrenergic neuron hasDbXref "ZFA:0009061"

  • mapping_justification UnspecifiedMatching

photopic photoreceptor cell http://purl.obolibrary.org/obo/CL_0000490

Added

• photopic photoreceptor cell hasRelatedSynonym "cone cell"

  • hasDbXref "https://www.ncbi.nlm.nih.gov/books/NBK542177/"

  • hasDbXref "PMID:38589506"

• photopic photoreceptor cell IAO_0000115 "A type of photoreceptor cell that is capable of detecting light under well light and bright condition (i.e. daylight). This cell type is responsible for colour vision."

  • hasDbXref "https://www.ncbi.nlm.nih.gov/books/NBK542177/"

• photopic photoreceptor cell hasRelatedSynonym "cone photoreceptor"

  • hasDbXref "https://www.ncbi.nlm.nih.gov/books/NBK542177/"

polymodal nocireceptor http://purl.obolibrary.org/obo/CL_0000567

Added

• polymodal nocireceptor IAO_0000115 "A type of pain receptor cell with soma in the peripheral nervous system. This cell type responds to a multiple type of noxious stimuli and its soma is located in the trigeminal root ganglia in the facial nerves and in the dorsal root ganglia in the rest of the body."

  • hasDbXref "https://www.ncbi.nlm.nih.gov/books/NBK551562/"

  • hasDbXref "PMID:21041958"

  • hasDbXref "PMID:37006298"

  • hasDbXref "PMID:38806708"

scotopic photoreceptor cell http://purl.obolibrary.org/obo/CL_0000489

Added

• scotopic photoreceptor cell IAO_0000115 "A type of photoreceptor cell that is capable of detecting very low light levels (i.e. in darkness)."

  • hasDbXref "https://www.ncbi.nlm.nih.gov/books/NBK542177/"

• scotopic photoreceptor cell hasRelatedSynonym "rod cell"

  • hasDbXref "https://www.ncbi.nlm.nih.gov/books/NBK542177/"

  • hasDbXref "PMID:38589506"

• scotopic photoreceptor cell hasRelatedSynonym "rod photoreceptor"

  • hasDbXref "https://www.ncbi.nlm.nih.gov/books/NBK542177/"

  • hasDbXref "PMID:38589506"

sensory processing neuron http://purl.obolibrary.org/obo/CL_0000379

Added

• sensory processing neuron IAO_0000115 "A neuron of the central nervous system capable of processing external sensory stimuli."

  • hasDbXref "Wikipedia:Sensory_neuron"

  • hasDbXref "https://www.ncbi.nlm.nih.gov/books/NBK547656/"

slowly adapting mechanoreceptor cell http://purl.obolibrary.org/obo/CL_0000544

Added

• slowly adapting mechanoreceptor cell IAO_0000115 "A type of mechanoreceptor cell that responds to a sustained stimulus with reduced sensitivity. This mechanoreceptor cell is capable of being responsive to ongoing stimuli."

  • hasDbXref "wikipedia:Mechanoreceptor"

  • hasDbXref "PMID:19625527"

  • hasDbXref "https://www.kenhub.com/en/library/physiology/peripheral-mechanosensory-receptors"

• slowly adapting mechanoreceptor cell hasRelatedSynonym "SA mechanoreceptor cell"

  • hasDbXref "PMID:19625527"

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

CNS long range interneuron http://purl.obolibrary.org/obo/CL_0000410

Added

• CNS long range interneuron definition "A type of interneuron with its soma located in a cerebral cortex. This neuronal type extends their axons to remote cortical and subcortical areas."

  • database_cross_reference "PMID:34322002"

  • database_cross_reference "PMID:35392440"

CNS short range interneuron http://purl.obolibrary.org/obo/CL_0000406

Added

• CNS short range interneuron definition "A type of interneuron with its soma located in a central nervous system. This neuronal type extends their axons locally within the same circuit."
  • database_cross_reference "PMID:23394773"

Mauthner neuron http://purl.obolibrary.org/obo/CL_0000246

Added

• Mauthner neuron definition "A reticulospinal neuron with soma location in the hindbrain of fish and amphibians. This neuron type is responsible for the rapid escape response known as C-start escape."

  • database_cross_reference "PMID:11163687"

• Mauthner neuron SubClassOf reticulospinal neuron

R1 photoreceptor cell http://purl.obolibrary.org/obo/CL_0000687

Added

• R1 photoreceptor cell definition "A photoreceptor cell in the Drosophila visual system. The R1 photoreceptor is capable of detecting UV light and blue-green light with its sensitivity peaking at ∼360 nm and ∼490 nm. This photoreceptor expresses the opsin Rh1 which is responsible for light detection. This photoreceptor cell is arranged in the outer edges of the Drosophila ommatidia and it forms a trapezoidal pattern together with other photoreceptors. This photoreceptor innervates the laminate in the Drosophila optic lobe."

  • database_cross_reference "PMID:19623243"

  • database_cross_reference "PMID:34003117"

  • database_cross_reference "PMID:37128740"

  • database_cross_reference "PMID:31207209"

• R1 photoreceptor cell symbol "R1"

  • database_cross_reference "PMID:37128740"

R2 photoreceptor cell http://purl.obolibrary.org/obo/CL_0000690

Added

• R2 photoreceptor cell definition "A photoreceptor cell in the Drosophila visual system. The R2 photoreceptor is capable of detecting UV light and blue-green light with its sensitivity peaking at ∼360 nm and ∼490 nm. This photoreceptor expresses the opsin Rh1 which is responsible for light detection. This photoreceptor cell is arranged in the outer edges of the Drosophila ommatidia and it forms a trapezoidal pattern together with other photoreceptors. This photoreceptor innervates the laminate in the Drosophila optic lobe."

  • database_cross_reference "PMID:19623243"

  • database_cross_reference "PMID:34003117"

  • database_cross_reference "PMID:37128740"

  • database_cross_reference "PMID:31207209"

• R2 photoreceptor cell symbol "R2"

  • database_cross_reference "PMID:37128740"

R3 photoreceptor cell http://purl.obolibrary.org/obo/CL_0000694

Added

• R3 photoreceptor cell symbol "R3"

  • database_cross_reference "PMID:37128740"

• R3 photoreceptor cell definition "A photoreceptor cell in the Drosophila visual system. The R3 photoreceptor is capable of detecting UV light and blue-green light with its sensitivity peaking at ∼360 nm and ∼490 nm. This photoreceptor expresses the opsin Rh1 which is responsible for light detection. This photoreceptor cell is arranged in the outer edges of the Drosophila ommatidia and it forms a trapezoidal pattern together with other photoreceptors. This photoreceptor innervates the laminate in the Drosophila optic lobe."

  • database_cross_reference "PMID:19623243"

  • database_cross_reference "PMID:34003117"

  • database_cross_reference "PMID:37128740"

  • database_cross_reference "PMID:31207209"

R4 photoreceptor cell http://purl.obolibrary.org/obo/CL_0000697

Added

• R4 photoreceptor cell definition "A photoreceptor cell in the Drosophila visual system. The R4 photoreceptor is capable of detecting UV light and blue-green light with its sensitivity peaking at ∼360 nm and ∼490 nm. This photoreceptor expresses the opsin Rh1 which is responsible for light detection. This photoreceptor cell is arranged in the outer edges of the Drosophila ommatidia and it forms a trapezoidal pattern together with other photoreceptors. This photoreceptor innervates the laminate in the Drosophila optic lobe."

  • database_cross_reference "PMID:19623243"

  • database_cross_reference "PMID:34003117"

  • database_cross_reference "PMID:37128740"

  • database_cross_reference "PMID:31207209"

• R4 photoreceptor cell symbol "R4"

  • database_cross_reference "PMID:37128740"

R5 photoreceptor cell http://purl.obolibrary.org/obo/CL_0000702

Added

• R5 photoreceptor cell definition "A photoreceptor cell in the Drosophila visual system. The R5 photoreceptor is capable of detecting UV light and blue-green light with its sensitivity peaking at ∼360 nm and ∼490 nm. This photoreceptor expresses the opsin Rh1 which is responsible for light detection. This photoreceptor cell is arranged in the outer edges of the Drosophila ommatidia and it forms a trapezoidal pattern together with other photoreceptors. This photoreceptor innervates the laminate in the Drosophila optic lobe."

  • database_cross_reference "PMID:19623243"

  • database_cross_reference "PMID:34003117"

  • database_cross_reference "PMID:37128740"

  • database_cross_reference "PMID:31207209"

• R5 photoreceptor cell symbol "R5"

  • database_cross_reference "PMID:37128740"

R6 photoreceptor cell http://purl.obolibrary.org/obo/CL_0000705

Added

• R6 photoreceptor cell definition "A photoreceptor cell in the Drosophila visual system. The R6 photoreceptor is capable of detecting UV light and blue-green light with its sensitivity peaking at ∼360 nm and ∼490 nm. This photoreceptor expresses the opsin Rh1 which is responsible for light detection. This photoreceptor cell is arranged in the outer edges of the Drosophila ommatidia and it forms a trapezoidal pattern together with other photoreceptors. This photoreceptor innervates the laminate in the Drosophila optic lobe."

  • database_cross_reference "PMID:19623243"

  • database_cross_reference "PMID:34003117"

  • database_cross_reference "PMID:37128740"

  • database_cross_reference "PMID:31207209"

• R6 photoreceptor cell symbol "R6"

  • database_cross_reference "PMID:37128740"

• R6 photoreceptor cell SubClassOf CNS neuron (sensu Nematoda and Protostomia)

R7 photoreceptor cell http://purl.obolibrary.org/obo/CL_0000707

Added

• R7 photoreceptor cell symbol "R7"

  • database_cross_reference "PMID:37128740"

• R7 photoreceptor cell definition "A photoreceptor cell in the Drosophila visual system. The R7 photoreceptor cell is a capable of detecting UV light at peak of 330nm wavelength, this cell type expresses the opsin gene Rh3 or Rh4 and it is located at the center of the drosophila ommatidia. Photoreceptor R7 innervates the M6 layer in the medulla in Drosophila the optic lobe."

  • database_cross_reference "PMID:19623243"

  • database_cross_reference "PMID:34003117"

  • database_cross_reference "PMID:37128740"

  • database_cross_reference "PMID:31207209"

• R7 photoreceptor cell SubClassOf CNS neuron (sensu Nematoda and Protostomia)

R8 photoreceptor cell http://purl.obolibrary.org/obo/CL_0000709

Added

• R8 photoreceptor cell definition "A photoreceptor cell in the Drosophila visual system. The R8 photoreceptor is capable of detecting UV light . This photoreceptor expresses the opsin Rh5 or Rh6 which detect light at their peak of 435 nm and 600 nm. This photoreceptor cell is arranged in the center of the Drosophila ommatidia and it innervates the medulla in the Drosophila optic lobe."

  • database_cross_reference "PMID:19623243"

  • database_cross_reference "PMID:34003117"

  • database_cross_reference "PMID:37128740"

  • database_cross_reference "PMID:31207209"

• R8 photoreceptor cell symbol "R8"

acceleration receptive cell http://purl.obolibrary.org/obo/CL_0000204

Added

• acceleration receptive cell definition "A type of neuronal receptor cells that is responsive to changes of speed over time in a central nervous system."

  • database_cross_reference "PMID:15342736"

  • database_cross_reference "PMID:18831600"

• acceleration receptive cell comment "These neurons have been widely studied in pigeon brains. They were found in the pretectal nucleus in the brain of pigeons and they are characterised by plates-shaped firing rates sensitive to speed."

  • database_cross_reference "PMID:15342736"

  • database_cross_reference "PMID:18831600"

adrenergic neuron http://purl.obolibrary.org/obo/CL_0000109

Removed

• adrenergic neuron database_cross_reference "MESH:D059331"

• adrenergic neuron label "adrenergic neuron"

• Class: adrenergic neuron

• adrenergic neuron SubClassOf catecholaminergic neuron

• adrenergic neuron SubClassOf neuron

noradrenergic neuron http://purl.obolibrary.org/obo/CL_0008025

Added

• noradrenergic neuron database_cross_reference "MESH:D059331"

• noradrenergic neuron has_related_synonym "adrenergic neuron"

• noradrenergic neuron SubClassOf neuron

• noradrenergic neuron SubClassOf catecholaminergic neuron

photopic photoreceptor cell http://purl.obolibrary.org/obo/CL_0000490

Added

• photopic photoreceptor cell has_related_synonym "cone cell"

  • database_cross_reference "https://www.ncbi.nlm.nih.gov/books/NBK542177/"

  • database_cross_reference "PMID:38589506"

• photopic photoreceptor cell definition "A type of photoreceptor cell that is capable of detecting light under well light and bright condition (i.e. daylight). This cell type is responsible for colour vision."

  • database_cross_reference "https://www.ncbi.nlm.nih.gov/books/NBK542177/"

• photopic photoreceptor cell has_related_synonym "cone photoreceptor"

  • database_cross_reference "https://www.ncbi.nlm.nih.gov/books/NBK542177/"

polymodal nocireceptor http://purl.obolibrary.org/obo/CL_0000567

Added

• polymodal nocireceptor definition "A type of pain receptor cell with soma in the peripheral nervous system. This cell type responds to a multiple type of noxious stimuli and its soma is located in the trigeminal root ganglia in the facial nerves and in the dorsal root ganglia in the rest of the body."

  • database_cross_reference "PMID:38806708"

  • database_cross_reference "PMID:21041958"

  • database_cross_reference "PMID:37006298"

  • database_cross_reference "https://www.ncbi.nlm.nih.gov/books/NBK551562/"

scotopic photoreceptor cell http://purl.obolibrary.org/obo/CL_0000489

Added

• scotopic photoreceptor cell definition "A type of photoreceptor cell that is capable of detecting very low light levels (i.e. in darkness)."

  • database_cross_reference "https://www.ncbi.nlm.nih.gov/books/NBK542177/"

• scotopic photoreceptor cell has_related_synonym "rod cell"

  • database_cross_reference "https://www.ncbi.nlm.nih.gov/books/NBK542177/"

  • database_cross_reference "PMID:38589506"

• scotopic photoreceptor cell has_related_synonym "rod photoreceptor"

  • database_cross_reference "https://www.ncbi.nlm.nih.gov/books/NBK542177/"

  • database_cross_reference "PMID:38589506"

sensory processing neuron http://purl.obolibrary.org/obo/CL_0000379

Added

• sensory processing neuron definition "A neuron of the central nervous system capable of processing external sensory stimuli."

  • database_cross_reference "Wikipedia:Sensory_neuron"

  • database_cross_reference "https://www.ncbi.nlm.nih.gov/books/NBK547656/"

slowly adapting mechanoreceptor cell http://purl.obolibrary.org/obo/CL_0000544

Added

• slowly adapting mechanoreceptor cell definition "A type of mechanoreceptor cell that responds to a sustained stimulus with reduced sensitivity. This mechanoreceptor cell is capable of being responsive to ongoing stimuli."

  • database_cross_reference "wikipedia:Mechanoreceptor"

  • database_cross_reference "PMID:19625527"

  • database_cross_reference "https://www.kenhub.com/en/library/physiology/peripheral-mechanosensory-receptors"

• slowly adapting mechanoreceptor cell has_related_synonym "SA mechanoreceptor cell"

  • database_cross_reference "PMID:19625527"

[github-actions]

This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR editor will be allowed to proceed with merging without explicit approval, should they wish to do so.

[KrishnaTO]

@matentzn should be able to fix PR by reverting commit 0d3d161
Add commit here KrishnaTO@ae884ed which just obsoletes term obo:CL_0000109 (adrenergic neuron)

[matentzn]

@KrishnaTO thank you for the analysis. I am not sure of anything related to this PR; It needs to many of my brain cells to define a path forward.

@AvolaAmg Could you kindle redo the PR, taking into account the feedback by @gouttegd and explaining exactly what the PR is adding (the related issue is also too complex).