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OBA:VT0008073 CD4-positive T cell quantity OBA:VT0008077 CD8-positive T cell quantity OBA:VT0008038 NK T cell quantity OBA:VT0010441 parasite quantity OBA:VT0010440 bacteria quantity VT:1000189 offspring quantity OBA:1000859 brood size quality exact synonym VT:1000181 viable offspring quantity OBA:1000859 brood size quality broad synonym Part of #85.
matentzn
reviewed
Sep 27, 2022
| OBA:VT0010476 blood glutamate dehydrogenase amount GO:1990148 glutamate dehydrogenase complex PATO:0000070 amount UBERON:0000178 blood | ||
| OBA:VT0010540 urine creatinine amount CHEBI:16737 creatinine PATO:0000070 amount UBERON:0001088 urine | ||
| OBA:VT0010441 parasite quantity OPL:0000232 parasite organism PATO:0000070 amount UBERON:0000468 multicellular organism | ||
| OBA:VT0010440 bacteria quantity NCBITaxon:2 Bacteria PATO:0000070 amount UBERON:0000468 multicellular organism |
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is this how we want to deal with species? Is the precedent anywhere in the file?
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No, I am afraid I could not find any precedent in the data files.
On second thought, the entity_attribute_location pattern is not the right one for these host-[symbiont, parasite, infectious organism] interactions from the point of view of the host (as a trait of the host), because the infecting organism should not be regarded a part_of the host.
Would the axiom below using RO:0002453 host of work for these?
equivalentTo:
text: "%s and 'characteristic_of' some (
%s and
('host_of' some %s)
)"
vars:
- attribute
- host
- parasite
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Can you ask on slack about a suitable pattern for this scenario?
Remove duplicate VT terms from OBA and add them as exact synonyms * Remove 1. OBA:VT0008073 CD4-positive T cell quantity 2. OBA:VT0008077 CD8-positive T cell quantity 3. OBA:VT0008038 NK T cell quantity * Add synonyms: 1. VT:0008073 CD4-positive T cell quantity skos:exactMatch OBA:0004294 2. VT:0008077 CD8-positive T cell quantity skos:exactMatch OBA:0004295 3. VT:0008038 NK T cell quantity skos:exactMatch OBA:0004281 Part of #85.
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OBA:VT0008073 CD4-positive T cell quantity
OBA:VT0008077 CD8-positive T cell quantity
OBA:VT0008038 NK T cell quantity
OBA:VT0010441 parasite quantity
OBA:VT0010440 bacteria quantity
VT:1000189 offspring quantity OBA:1000859 brood size quality exact synonym VT:1000181 viable offspring quantity OBA:1000859 brood size quality broad synonym
Part of #85.