dwgsim.0.1.16

Changes in 0.1.16

Features

• feat: the -M option now specifies the output type (reads, variants, or both) (#85)

Bug Fixes

• fix: check realloc return values for allocation failures
• fix: add null checks after memory allocation
• fix: correct off-by-one error in insertion sequence processing
• fix: prevent buffer overflow in filename construction

Refactoring

• refactor: remove unused functions

dwgsim.0.1.15

What's Changed

• feat: add support for amplicons by @nh13 in #84
• ci: migrate ubuntu-latest to ubuntu-24.04 by @nh13 in #90
• fix: fix build issues with gcc-14 and gcc-15 by @nh13 in #92

Full Changelog: dwgsim.0.1.14...dwgsim.0.1.15

dwgsim.0.1.14

This is a minor release.

Bug fixes:

• -x fails to emit reads up to the end of the 3' target #74

Minor changes:

• improve error message when the input BED is not coordinate sorted #75

Other changes:

• use github actions to build and test #76
• update github badges #77
• migrate documentation to wiki to checked-in markdown docs #78

dwgsim.0.1.13

Minor release:

• Adding the -A option to control the read strand. #54
• Better error message for out of order contigs #66

dwgsim.0.1.12

• produces an error if the insert size is too small for the provided read lengths
• deletions were always being report as homozygous; should only affect the output VCF's AF field.
• insertions were inserted into the reads one base too early relative to the stated genomic location.
• "long" insertions on the forward strand were not inserted into the correct location in the read.
• read names no longer collide when producing a large number of reads.
• fix the error message when giving a wrong value for -z.
• correctly parse negative numbers on the command line.
• corrected the output description of dwgsim_eval
• various compile fixups