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Implemented circos flag for purple #260

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rhassaine wants to merge 1 commit intonf-core:devfrom
rhassaine:bug/toggle-purple-circos
Open

Implemented circos flag for purple #260
rhassaine wants to merge 1 commit intonf-core:devfrom
rhassaine:bug/toggle-purple-circos

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@rhassaine
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Implemented circos flag for purple - default set to true
Can be modified through config or cli arg

Updated config, schema and module

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • [N/A] If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • [N/A] If necessary, also make a PR on the nf-core/oncoanalyser branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • [N/A] Usage Documentation in docs/usage.md is updated.
  • [N/A] Output Documentation in docs/output.md is updated.
  • [N/A] CHANGELOG.md is updated.
  • [N/A] README.md is updated (including new tool citations and authors/contributors).

@rhassaine rhassaine requested a review from scwatts November 7, 2025 14:30
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Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.3.2.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

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