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Finish moving the rest of the MerquryFK modules to topic versions, and bump FastK and MerquryFK to 1.2.

I have left the PloidyPlot module with the previous version of MerquryFK as it is removed from the latest release. We can look at deprecating the module down the line but the tool that replaces it (smudgeplot: https://github.com/KamilSJaron/smudgeplot) does not yet have an nf-core module.

PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@SPPearce SPPearce added this pull request to the merge queue Jan 22, 2026
Merged via the queue into nf-core:master with commit 6fabc0a Jan 22, 2026
53 checks passed
@prototaxites prototaxites deleted the merquryfk_rest branch January 22, 2026 07:06
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2 participants