This repository contains utilities to manipulate Artemis compatible coverage graphs (denote *.grp format), and a set of commands developed based on this file format. The grp file can be visualized using Artemis directly by clicking on Graphs => Add User Plot. The majority of the grp manipulating commands can be found within grptools.
wig2grp.py: convert Wiggle files generated bybam2wig.pyfrom the RseQC package to grp format.merge_grp.py: given a list of grp files from the same genome, this script will average/add-up the coverage at each genome coordinate, then return a new grp file.grptools: a suite of subcommands for grp file manipulations.tptools: a suite of subcommands for TSS prediction and classification.tss_analysis_pipline.sh: an example shell script utilizinggrptoolsandtptoolsfor grp file processing, TSS prediction and classification.