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@gitter-lab

Gitter Lab

Computational biology research group at UW-Madison and the Morgridge Institute

Popular repositories Loading

  1. nn4dms nn4dms Public

    Neural networks for deep mutational scanning data

    Jupyter Notebook 72 18

  2. metl metl Public

    Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models

    Python 60 9

  3. metl-sim metl-sim Public

    High-throughput framework for running molecular simulations for METL

    Python 23 6

  4. LPWC LPWC Public

    Lag Penalized Weighted Correlation for Time Series Clustering

    R 21 3

  5. metl-pretrained metl-pretrained Public

    Pretrained METL models with minimal dependencies

    Python 16 5

  6. ssps ssps Public

    Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference

    Julia 14

Repositories

Showing 10 of 36 repositories
  • metl Public

    Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models

    gitter-lab/metl’s past year of commit activity
    Python 60 MIT 9 3 1 Updated Feb 3, 2026
  • adaptyvbio-nipah Public

    Adaptyv Nipah Binder Competition

    gitter-lab/adaptyvbio-nipah’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Dec 16, 2025
  • tps Public Forked from koksal/tps

    Temporal Pathway Synthesizer

    gitter-lab/tps’s past year of commit activity
    Jupyter Notebook 0 8 0 1 Updated Oct 10, 2025
  • metl-sim Public

    High-throughput framework for running molecular simulations for METL

    gitter-lab/metl-sim’s past year of commit activity
    Python 23 MIT 6 4 0 Updated Sep 18, 2025
  • metl-pub Public

    Supplementary datasets and scripts for the METL manuscript

    gitter-lab/metl-pub’s past year of commit activity
    Jupyter Notebook 7 MIT 1 0 0 Updated Sep 18, 2025
  • metl-pretrained Public

    Pretrained METL models with minimal dependencies

    gitter-lab/metl-pretrained’s past year of commit activity
    Python 16 MIT 5 1 1 Updated Sep 18, 2025
  • benchmarking-structure-based-models Public

    This is a repository of code needed to replicate benchmarks of structure based models in ProteinGym

    gitter-lab/benchmarking-structure-based-models’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Sep 14, 2025
  • ChemLML Public

    Chemical Language Model Linker

    gitter-lab/ChemLML’s past year of commit activity
    Python 8 MIT 1 2 0 Updated Aug 22, 2025
  • pathway-localization Public

    Scripts, data, and supplementary information for "Graph algorithms for predicting subcellular localization at the pathway level"

    gitter-lab/pathway-localization’s past year of commit activity
    Python 1 CC-BY-4.0 1 1 0 Updated Aug 8, 2025
  • active-learning-drug-discovery Public

    Iterative chemical screening pipeline for drug discovery

    gitter-lab/active-learning-drug-discovery’s past year of commit activity
    Jupyter Notebook 6 MIT 0 13 1 Updated Aug 6, 2025

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