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Add KMC as requirement

Status: Open.

#31 In dkoslicki/CMash;

· dkoslicki opened on Apr 17, 2020

For very large databases, creation of TST is slow and memory intensive

enhancement

priority

Status: Open.

#29 In dkoslicki/CMash;

· dkoslicki opened on Mar 24, 2020

Gzipping all training files results in a nice reduction: add feature that allows scripts/modules to handle this

enhancement

good first issue

Status: Open.

#28 In dkoslicki/CMash;

· dkoslicki opened on Mar 23, 2020

In MakeStreamingDNADatabase.py, don't require output directory to exist

good first issue

Status: Open.

#27 In dkoslicki/CMash;

· dkoslicki opened on Mar 20, 2020

Create script to demonstrate how to re-train CMash

Status: Open.

#26 In dkoslicki/CMash;

· dkoslicki opened on Mar 20, 2020

In post-processing, find correct denominator

Status: Open.

#23 In dkoslicki/CMash;

· dkoslicki opened on Mar 18, 2020

Test k-mer frequency distribution idea

Status: Open.

#21 In dkoslicki/CMash;

· dkoslicki opened on Feb 6, 2020

Multiple k-mer sizes confirmation and testing

priority

Status: Open.

#20 In dkoslicki/CMash;

· dkoslicki opened on Feb 6, 2020

Restructure repo so it's clear which approach is using the streaming, and which is using Bloom filters

good first issue

Status: Open.

#18 In dkoslicki/CMash;

· dkoslicki opened on Feb 6, 2020

Update PyPi release of CMash

Status: Open.

#17 In dkoslicki/CMash;

· dkoslicki opened on Feb 6, 2020

Make a Conda/bioconda release of CMash

good first issue

Status: Open.

#16 In dkoslicki/CMash;

· dkoslicki opened on Feb 6, 2020

Improved classification time with KMC

enhancement

good first issue

Status: Open.

#15 In dkoslicki/CMash;

· dkoslicki opened on Feb 6, 2020