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emirge_makedb.py add regex to allow for Silva <code>SSURef_N[Rr]99_tax...</code>

Status: Open.

#41 In csmiller/EMIRGE;

· mlhoggard opened on Nov 23, 2020

IndexError: Out of bounds on buffer access (axis 0)

Status: Open.

#38 In csmiller/EMIRGE;

· Arkadiy-Garber opened on Jan 27, 2018

Bowtie 1.2 breaks <code>emirge</code>

Status: Open.

#36 In csmiller/EMIRGE;

· andersgs opened on Mar 7, 2017

EMIRGE exit without an error message after completing iteration 0.

Status: Open.

#35 In csmiller/EMIRGE;

· ETaSky opened on Feb 24, 2017

emirge_makedb.py: please add an argument-option for providing pre-downloaded SILVA-db

Status: Open.

#34 In csmiller/EMIRGE;

· jvollme opened on Feb 2, 2017

Trouble resuming from completed iteration

Status: Open.

#32 In csmiller/EMIRGE;

· ppericard opened on Jan 13, 2017

techical difference between emirge and emirge_amplicon

Status: Open.

#31 In csmiller/EMIRGE;

· yxxue opened on Dec 23, 2016

Unexpected crash at 17th iteration

Status: Open.

#30 In csmiller/EMIRGE;

· ppericard opened on Nov 22, 2016

IndexError: Out of bounds on buffer access (axis 1)

Status: Open.

#27 In csmiller/EMIRGE;

· rbeinart opened on Aug 25, 2016

Reporting base probabilities in reconstructed sequences

Status: Open.

#10 In csmiller/EMIRGE;

· csmiller opened on Feb 20, 2013

EMIRGE should exit more gracefully if 0 sequences are reconstructed

Status: Open.

#9 In csmiller/EMIRGE;

· csmiller opened on Dec 3, 2012

EMIRGE presets and environmental variable defaults

Status: Open.

#7 In csmiller/EMIRGE;

· csmiller opened on May 25, 2012