viral-core

A set of scripts and tools for the analysis of viral NGS data.

More detailed command line documentation can be found at readthedocs

Developer documentation can be found at here

Higher level pipelines and workflows for viral-ngs can be found in the pipelines github repo.

Name		Name	Last commit message	Last commit date
Latest commit History 3,715 Commits
.github/workflows		.github/workflows
docker		docker
docs		docs
github_actions_ci		github_actions_ci
test		test
tools		tools
util		util
.coveragerc		.coveragerc
.coveralls.yml		.coveralls.yml
.dockerignore		.dockerignore
.flake8		.flake8
.gitattributes		.gitattributes
.gitignore		.gitignore
.landscape.yaml		.landscape.yaml
.pylintrc		.pylintrc
.readthedocs.yml		.readthedocs.yml
.style.yapf		.style.yapf
CLAUDE.md		CLAUDE.md
DEVELOPMENT_NOTES.md		DEVELOPMENT_NOTES.md
Dockerfile		Dockerfile
LICENSE		LICENSE
README.md		README.md
broad_utils.py		broad_utils.py
conftest.py		conftest.py
errors.py		errors.py
file_utils.py		file_utils.py
illumina.py		illumina.py
priorities.py		priorities.py
read_utils.py		read_utils.py
reports.py		reports.py
requirements-conda-tests.txt		requirements-conda-tests.txt
requirements-conda.txt		requirements-conda.txt

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