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Releases: biosimulations/compose-api

Use PBest In Compose API

02 Feb 13:49
ac98667

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What's Changed

  • Use execution starter kit by @Ezequiel-Valencia in #72
    • Changes to SLURM execution.
    • No longer use a custom version of process bi-graph.
    • Utilization of a mono-core.
    • Updating all simulation tests.

New Contributors

Full Changelog: 0.2.4...0.3.0

Fixed Container Building Action

24 Oct 15:04

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Pre-release
0.2.4

Fix Container Building Action

Demo Capable API

24 Oct 14:25

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Demo Capable API Pre-release
Pre-release

The Compose API is now capable of:

  • Executing time course focused SedML (disregarding outputs)
  • SBML that can be executed in Copasi
  • Curated endpoints specifically for
    • Copasi
    • Tellurium
  • Endpoints to list simulators, processes, and steps
  • Track coarse grain status of simulations
  • Dynamically build singularity containers if packages have been approved
  • Get the results of simulations

Still not polished enough to be large scale production ready.

Minimal Proof of Concept

16 Sep 13:59

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Pre-release

An API server that can create the required containers, run simulations, and return results from the simulations.