Search results

Optimization for function Bio::PrimarySeqI::_find_orfs_nucleotide()

Status: Open.

#406 In bioperl/bioperl-live;

· kprokopiou opened on Dec 6, 2025

Bio::PrimarySeq->subseq() when called with -replace_with doesn't update length

Status: Open.

#405 In bioperl/bioperl-live;

· kprokopiou opened on Nov 24, 2025

Bio::SeqIO::fastq can't handle FASTQ with empty sequence and quality lines

Status: Open.

#400 In bioperl/bioperl-live;

· ntakebay opened on May 21, 2025

splitting out Bio::OntologyIO::InterProParser into separate distribution

Status: Open.

#399 In bioperl/bioperl-live;

· carandraug opened on Apr 10, 2025

removing Bio::Ontology::SimpleGOEngine::GraphAdaptor

Status: Open.

#398 In bioperl/bioperl-live;

· carandraug opened on Apr 7, 2025

New warnings with perl 5.41.x

Status: Open.

#394 In bioperl/bioperl-live;

· eserte opened on Oct 18, 2024

Could Bio::DB::Fasta support gzipped FASTA?

Status: Open.

#393 In bioperl/bioperl-live;

· Tong-Chen opened on Sep 10, 2024

Bio::Tools::GFF add extra empty attribute problematic

Status: Open.

#388 In bioperl/bioperl-live;

· Juke34 opened on Apr 4, 2024

Suggestion: create a CODEOWNERS file to connect modules with maintainers

Status: Open.

#377 In bioperl/bioperl-live;

· zmughal opened on Apr 19, 2023

Minimum Perl version should be set to v5.8

Status: Open.

#375 In bioperl/bioperl-live;

· zmughal opened on Apr 15, 2023

·  

1.7.3

Bio::Tools::GFF doesn't write eukaryotic multi-exon genes correctly

Status: Open.

#369 In bioperl/bioperl-live;

· krobison13 opened on Apr 7, 2022

make a CITATION.cff?

Status: Open.

#368 In bioperl/bioperl-live;

· hyphaltip opened on Apr 7, 2022