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[WIP] update ViennaRNA#1851

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bgruening wants to merge 3 commits intomasterfrom
viennarna
Open

[WIP] update ViennaRNA#1851
bgruening wants to merge 3 commits intomasterfrom
viennarna

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@bgruening
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FOR CONTRIBUTOR:

  • I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
  • License permits unrestricted use (educational + commercial)
  • This PR adds a new tool or tool collection
  • This PR updates an existing tool or tool collection
  • This PR does something else (explain below)

There are two labels that allow to ignore specific (false positive) tool linter errors:

  • skip-version-check: Use it if only a subset of the tools has been updated in a suite.
  • skip-url-check: Use it if github CI sees 403 errors, but the URLs work.

@bgruening
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The kinwalker binary in quay.io/biocontainers/viennarna:2.7.2--py313pl5321h1f5d440_1 segfaults on any sequence input.

No idea if this is a bug in the conda recipe?

<expand macro="requirements"/>
<expand macro="version_command"/>
<command detect_errors="aggressive"><![CDATA[
ln -s '$input' ./input.{$input.ext} &&
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@pavanvidem this is just a guess. I hope this helps with https://github.com/usegalaxy-eu/issues/issues/978

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Its not clear if its working and if we need this for all tools here.

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2 participants