Update dependencies to address security vulnerabilities#322

Merged

rvosa merged 42 commits intomasterfrom

copilot/fix-dependabot-alerts

Dec 23, 2025

Commits on Dec 23, 2025

Replace deprecated queryForInt() with queryForObject() for Spring 4.x compatibility

Copilot
and
rvosa
committed
Upgrade Hibernate from 3.3.1 to 4.3.11 for Spring 4.x compatibility

Copilot
and
rvosa
committed
Replace deprecated Hibernate 3.x annotations with JPA standard annotations for Hibernate 4.x

Copilot
and
rvosa
committed
Update Hibernate API calls for Hibernate 4.x compatibility

Copilot
and
rvosa
committed
Fix EnvironmentTest to use Hibernate 4.x ReturningWork instead of SessionImpl

Copilot
and
rvosa
committed
Update Spring configuration and imports from Hibernate 3 to Hibernate 4

Copilot
and
rvosa
committed
Remove HibernateAccessor import and update JavaDoc to reference Hibernate FlushMode

Copilot
and
rvosa
committed
Fix Hibernate 4.x Session API: replace getSession() with getSessionFactory().getCurrentSession() and update FlushMode handling

Copilot
and
rvosa
committed
Replace all remaining getSession() calls with getSessionFactory().getCurrentSession() across all DAO classes

Copilot
and
rvosa
committed
Fix remaining getSession() calls across all DAO and utility classes for Hibernate 4.x

Copilot
and
rvosa
committed
Add SLF4J dependencies for Hibernate 4.3.11 compatibility

Copilot
and
rvosa
committed
Fix SLF4J compatibility: use log4j-slf4j-impl 2.17.2 and add log4j-1.2-api bridge

Copilot
and
rvosa
committed
Upgrade SLF4J to 2.0.16 and use log4j-slf4j2-impl 2.24.3 for full Log4j 2.24.3 compatibility

Copilot
and
rvosa
committed
Use SLF4J 1.7.36 with log4j-slf4j-impl for Hibernate 4.3.11 compatibility

Copilot
and
rvosa
committed
Upgrade Hibernate to 5.6.15.Final and SLF4J to 2.0.16 for modern API compatibility

Copilot
and
rvosa
committed
Update Spring configuration and imports from Hibernate 4 to Hibernate 5

Copilot
and
rvosa
committed
Fix Hibernate 5.x API compatibility: update FlushMode to FlushModeType and SequenceGenerator to SequenceStyleGenerator

Copilot
and
rvosa
committed
Fix Hibernate 5.x cache configuration: migrate from EhCacheProvider to EhCacheRegionFactory

Copilot
and
rvosa
committed
Upgrade c3p0 from 0.9.1.2 to 0.10.1 to fix JDBC compatibility with newer APIs

Copilot
and
rvosa
committed
Fix remaining Hibernate 3 imports in test classes: update to Hibernate 5

Copilot
and
rvosa
committed
Fix EnvironmentTest: remove manual connection commit/close for Hibernate 5.x compatibility

Copilot
and
rvosa
committed
Add Spring 4.x compatibility classes for deprecated form controllers in treebase-web

Copilot
and
rvosa
committed
Reimplement Spring 4.x compatibility classes using AbstractController instead of removed form controllers

Copilot
and
rvosa
committed
Add missing methods to CancellableFormController: getCancelView, showForm with Map parameter

Copilot
and
rvosa
committed
Add missing methods to CancellableFormController: referenceData, formBackingObject, onBind, getFormSessionAttributeName with session support

Copilot
and
rvosa
committed
Update dependencies to address security vulnerabilities

Copilot
and
rvosa
committed
Restore Spring 4.x compatibility classes and add missing methods: setSessionForm, showForm for wizard

Copilot
and
rvosa
committed
Complete Spring 4.x compatibility layer: fix type signatures, add missing methods, make onSubmit non-abstract

Copilot
and
rvosa
committed
Fix OAI-PMH controller: add AbstractCommandController compatibility class to data_provider_web module

Copilot
and
rvosa
committed
Migrate OAI-PMH test classes from Spring 2.x/3.x to Spring 4.x test framework

Copilot
and
rvosa
committed
Migrate OAI-PMH test suites from JUnit 3 to JUnit 4: use @Suite annotations instead of TestCase

Copilot
and
rvosa
committed
Fix OAI-PMH SLF4J compatibility: add SLF4J 2.0.16 and log4j-slf4j2-impl 2.24.3 dependencies

Copilot
and
rvosa
committed
Fix OAI-PMH SLF4J conflict: exclude transitive SLF4J dependencies from treebase-core

Copilot
and
rvosa
committed
Fix OAI-PMH SLF4J: use explicit SLF4J 2.0.16 and log4j-slf4j2-impl 2.24.3 matching treebase-core

Copilot
and
rvosa
committed
Fix OAI-PMH SLF4J conflict: exclude old SLF4J versions from struts-menu and displaytag dependencies

Copilot
and
rvosa
committed
Fix OAI-PMH ApplicationContext error: add Apache Velocity 1.7 dependency for Spring 4.x compatibility

Copilot
and
rvosa
committed
Add validator property to AbstractCommandController for Spring 3.x compatibility

Copilot
and
rvosa
committed
Fix OAI-PMH ANTLR version conflict: exclude ANTLR 2.7.2 from struts, use Hibernate's 2.7.7

Copilot
and
rvosa
committed