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KeyError in Stitcher when do_intensity_rescale='full_image'

Status: Open.

#377 In MannLabs/scPortrait;

· vvarlamova opened on Feb 24, 2026

Set default Color if no column is available

Status: Open.

#369 In MannLabs/scPortrait;

· sophiamaedler opened on Feb 5, 2026

python 3.10 no longer supported for spatialdata-plot >= 0.2.14

Status: Open.

#368 In MannLabs/scPortrait;

· sophiamaedler opened on Feb 5, 2026

processing multiple images

Status: Open.

#365 In MannLabs/scPortrait;

· linzhangTuesday opened on Feb 3, 2026

aborted downloads of external resources (e.g. example config files) leads to cryptic errors

Status: Open.

#364 In MannLabs/scPortrait;

· sophiamaedler opened on Feb 3, 2026

confocal data workflow/Golgi data reproduce

Status: Open.

#363 In MannLabs/scPortrait;

· linzhangTuesday opened on Jan 30, 2026

add suport for zstd compression of h5sc files

enhancementNew feature or requestNew feature or request

Status: Open.

#345 In MannLabs/scPortrait;

· sophiamaedler opened on Nov 11, 2025

differences between segmentation report and cell extraction in scportrait 1.4.0.

Status: Open.

#323 In MannLabs/scPortrait;

· machth opened on Sep 4, 2025

[dependencies] extraction workflow/h5sc files fail with anndata>=0.12.0

dependencies

Status: Open.

#317 In MannLabs/scPortrait;

· machth opened on Aug 19, 2025

[BUG] graph-tool version number

Status: Open.

#314 In MannLabs/scPortrait;

· sophiamaedler opened on Aug 7, 2025

accelerate centroid calculation

Status: Open.

#289 In MannLabs/scPortrait;

· sophiamaedler opened on Apr 17, 2025

Transformations in sdata image objects not properly applied throughout scPortrait workflow

Status: Open.

#280 In MannLabs/scPortrait;

· machth opened on Apr 10, 2025