Very basic tool for converting MCD files to OME-Zarr. Uses the wonderful readimc library (https://bodenmillergroup.github.io/readimc/index.html).
Simple example use (with uv):
wget https://www.ebi.ac.uk/biostudies/files/S-BIAD587/MH288_ESD5_ESD7_HYP2020_v3.1.mcd
uv run imc_to_ome_zarr.py MH288_ESD5_ESD7_HYP2020_v3.1.mcd MH288.ome.zarr
uv run bia-zarr thumbnail MH288.ome.zarr --channels 1,15,25 --output thumb.png