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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 27 18

  2. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 21 8

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 14 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 13 3

  5. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 10 3

  6. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

    Python 8

Repositories

Showing 10 of 544 repositories
  • aind-data-transfer-service Public

    FastAPI service to run data compression and transfer jobs on the hpc

    AllenNeuralDynamics/aind-data-transfer-service’s past year of commit activity
    Python 3 MIT 0 7 1 Updated Dec 24, 2025
  • aind-metadata-mapper Public

    Repository to help gather and map metadata from different sources

    AllenNeuralDynamics/aind-metadata-mapper’s past year of commit activity
    Python 0 MIT 2 46 (1 issue needs help) 6 Updated Dec 24, 2025
  • aind-smartspim-ccf-registration Public

    Registration of lightsheet whole brain images to the Allen CCF V3 Atlas

    AllenNeuralDynamics/aind-smartspim-ccf-registration’s past year of commit activity
    Python 4 MIT 5 11 2 Updated Dec 24, 2025
  • nmcp-deploy Public
    AllenNeuralDynamics/nmcp-deploy’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 24, 2025
  • nmcp-precomputed Public

    NMCP precomputed worker/service.

    AllenNeuralDynamics/nmcp-precomputed’s past year of commit activity
    Python 0 0 0 0 Updated Dec 24, 2025
  • aind-data-transfer-lite Public

    A lightweight version of AIND Data Transfer Service.

    AllenNeuralDynamics/aind-data-transfer-lite’s past year of commit activity
    Python 0 MIT 1 5 1 Updated Dec 24, 2025
  • aind-ephys-hybrid-job-dispatch Public

    Job dispatch capsule for hybrid evaluation benchmarks

    AllenNeuralDynamics/aind-ephys-hybrid-job-dispatch’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 24, 2025
  • aind-smartspim-pipeline Public

    Repository that hosts the SmartSPIM pipeline code

    AllenNeuralDynamics/aind-smartspim-pipeline’s past year of commit activity
    Nextflow 3 MIT 3 2 0 Updated Dec 23, 2025
  • AllenNeuralDynamics/openscope-experimental-launcher’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 23, 2025
  • AllenNeuralDynamics/openscope-params’s past year of commit activity
    Python 0 0 0 0 Updated Dec 23, 2025