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Variant Annotation Pipeline

Python

This is a simple variant annotation project for genetics research.

#Project Structure

variant-annotation-pipeline/ ├── sample.vcf # Input VCF file ├── annotate.py # Python script ├── annotated_output.csv # Output CSV └── requirements.txt # Python dependencies

#How to Run

  1. Install Python
  2. Install dependencies:
pip install -r requirements.txt
  1. Run the script:
python annotate.py
  1. Check annotated_output.csv for output.

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Simple genetics variant annotation pipeline in Python

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