Protein Structure Repository
This repository contains a 3D biomolecular structure file in PDB format (.ent).
It can be viewed and analyzed using molecular visualization tools such as PyMOL, RasMol, UCSF Chimera, or VMD.

File Included

• pdb1hhu, pdb1kwf, pdb2fvy, pdb6rh4, pdb6rkn, pdb6roe, pdb6rqi, pdb6sbh, pdb8w8v A PDB structure file containing atomic coordinates of a protein.

How to View the Structure

🔹 Using PyMOL

pymol 74e41b27-de89-4a74-92f7-108f86001f09.ent

### **Useful PyMOL Commands**

show cartoon color cyan orient zoom

## Basic Analysis You Can Perform

### **Visual Inspection**
- Secondary structure (α-helix, β-sheet)
- Binding pockets
- Overall fold

### **2️Surface View**

show surface color white

### **3️Chain Identification**

show cartoon, chain A color yellow, chain A

### **4️Save Image**

png structure.png, dpi=300

## 🛠 Recommended Tools
| Tool | Purpose |
| PyMOL | Visualization & rendering |
| ChimeraX | Advanced structural analysis |
| RasMol | Lightweight viewer |
| VMD | Molecular dynamics visualization |

## License  
This project is for educational & academic bioinformatics use.

## Author  
Bioinformatics Student – GitHub Project