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Merge branch 'main' into coalesce-shard-reads
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.github/dependabot.yml

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actions:
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patterns:
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- "*"
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# Updates for support/v2 branch
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- package-ecosystem: "pip"
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directory: "/"
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target-branch: "support/v2"
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schedule:
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interval: "weekly"
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groups:
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requirements:
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patterns:
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- "*"
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- package-ecosystem: "github-actions"
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directory: "/"
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target-branch: "support/v2"

.github/workflows/codspeed.yml

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branches:
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- "main"
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pull_request:
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types: [labeled, synchronize]
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# `workflow_dispatch` allows CodSpeed to trigger backtest
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# performance analysis in order to generate initial data.
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workflow_dispatch:
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benchmarks:
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name: Run benchmarks
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runs-on: codspeed-macro
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# Only run benchmarks for: pushes to main, manual triggers, or PRs with 'benchmark' label
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if: |
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github.event_name == 'push' ||
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github.event_name == 'workflow_dispatch' ||
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(github.event_name == 'pull_request' && contains(github.event.pull_request.labels.*.name, 'benchmark'))
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steps:
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- uses: actions/checkout@v6
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with:

.github/workflows/lint.yml

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steps:
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- uses: actions/checkout@v6
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- name: Install uv
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uses: astral-sh/setup-uv@v5
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uses: astral-sh/setup-uv@v7
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- name: Install prek
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run: uv tool install prek
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- name: Run prek

.pre-commit-config.yaml

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repos:
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- repo: https://github.com/astral-sh/ruff-pre-commit
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rev: v0.14.10
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rev: v0.14.14
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hooks:
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- id: ruff-check
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args: ["--fix", "--show-fixes"]

README.md

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</a>
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</td>
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</tr>
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<tr>
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<td></td>
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<td>
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<a href="https://anaconda.org/anaconda/zarr/">
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<tr>
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<td>Package Status</td>
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<td>
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<a href="https://pypi.org/project/zarr/">
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<img src="https://img.shields.io/pypi/status/zarr.svg" alt="status" />
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</a>
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<a href="https://pypi.org/project/zarr/">
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<img src="https://img.shields.io/pypi/status/zarr.svg" alt="status" />
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</a>
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</td>
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</tr>
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<tr>
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<tr>
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<td>Pre-commit Status</td>
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<td>
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<a href=""https://github.com/zarr-developers/zarr-python/blob/main/.pre-commit-config.yaml">
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<a href="https://github.com/zarr-developers/zarr-python/blob/main/.pre-commit-config.yaml">
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<img src="https://results.pre-commit.ci/badge/github/zarr-developers/zarr-python/main.svg" alt="pre-commit status" />
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</a>
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</td>
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</tr>
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<tr>
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<td>Coverage</td>
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<td>
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<a href="https://codecov.io/gh/zarr-developers/zarr-python">
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<img src="https://codecov.io/gh/zarr-developers/zarr-python/branch/main/graph/badge.svg"/ alt="coverage">
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<img src="https://codecov.io/gh/zarr-developers/zarr-python/branch/main/graph/badge.svg" alt="coverage" />
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</a>
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</td>
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</tr>
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</td>
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</tr>
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<tr>
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<td>Developer Chat</td>
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<td>
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<a href="https://ossci.zulipchat.com/">
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<img src="https://img.shields.io/badge/zulip-join_chat-brightgreen.svg" />
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</a>
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</td>
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<td>Developer Chat</td>
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<td>
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<a href="https://ossci.zulipchat.com/">
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<img src="https://img.shields.io/badge/zulip-join_chat-brightgreen.svg" />
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</a>
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</td>
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</tr>
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<tr>
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<td>Funding</td>
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<td>
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<a href="https://chanzuckerberg.com/eoss/">
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<img src="https://img.shields.io/badge/funded%20by-EOSS-FF414B.svg?logo=data:image/svg+xml;base64,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" alt="CZI's Essential Open Source Software for Science">
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</a>
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</td>
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<td>Funding</td>
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<td>
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<a href="https://chanzuckerberg.com/eoss/">
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<img src="https://img.shields.io/badge/funded%20by-EOSS-FF414B.svg?logo=data:image/svg+xml;base64,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" alt="CZI's Essential Open Source Software for Science" />
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</a>
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</td>
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</tr>
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<td>Citation</td>
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<td>
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<a href="https://doi.org/10.5281/zenodo.3773450">
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<img src="https://zenodo.org/badge/DOI/10.5281/zenodo.3773450.svg" alt="DOI">
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</a>
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</td>
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<tr>
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<td>Citation</td>
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<td>
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<a href="https://doi.org/10.5281/zenodo.3773450">
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<img src="https://zenodo.org/badge/DOI/10.5281/zenodo.3773450.svg" alt="DOI" />
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</a>
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</td>
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changes/3657.bugfix.md

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Fix obstore _transform_list_dir implementation to correctly relativize paths (removing lstrip usage).

changes/3668.feature.md

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Exposes the array runtime configuration as an attribute called `config` on the `Array` and
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`AsyncArray` classes. The previous `AsyncArray._config` attribute is now a deprecated alias for `AsyncArray.config`.
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Adds a method for creating a new `Array` / `AsyncArray` instance with a new runtime configuration, and fixes inaccurate documentation about the `write_empty_chunks` configuration parameter.

changes/3673.misc.md

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Benchmark CI now only runs for PRs with the `benchmark` label, reducing CodSpeed credit usage.

changes/3695.bugfix.md

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Raise error when trying to encode :class:`numpy.dtypes.StringDType` with `na_object` set.

changes/3700.bugfix.md

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CacheStore, LoggingStore and LatencyStore now support with_read_only.

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