Pathways like WP366 throw errors

[AlexanderPico]

https://github.com/wikipathways/wikipathways-database/actions/runs/4776003043/jobs/8490733040

[ 0.028] Info: Recognized format [Namespace: prefix "" is mapped to URI "http://pathvisio.org/GPML/2013a"]
Warn: Unknown property: TERM
Warn: Unknown property: Ontology
[ 0.664] Info: Recognized format [Namespace: prefix "" is mapped to URI "http://pathvisio.org/GPML/2013a"]
Warn: Unknown property: TERM
Warn: Unknown property: Ontology
Warn: Unknown property: TERM
Warn: Unknown property: Ontology
[ 1.016] Info: Recognized format [Namespace: prefix "" is mapped to URI "http://pathvisio.org/GPML/2013a"]
Warn: Unknown property: TERM
Warn: Unknown property: Ontology
Warn: Unknown property: TERM
Warn: Unknown property: Ontology
Warn: Unknown property: TERM
Warn: Unknown property: Ontology
[ 1.253] Info: Recognized format [Namespace: prefix "" is mapped to URI "http://pathvisio.org/GPML/2013a"]
Warn: Unknown property: TERM
Warn: Unknown property: Ontology
Error: Exception in thread "main" java.lang.IllegalArgumentException: Comparison method violates its general contract!
at java.util.ComparableTimSort.mergeLo(ComparableTimSort.java:744)
at java.util.ComparableTimSort.mergeAt(ComparableTimSort.java:481)
at java.util.ComparableTimSort.mergeCollapse(ComparableTimSort.java:406)
at java.util.ComparableTimSort.sort(ComparableTimSort.java:213)
at java.util.Arrays.sort(Arrays.java:1312)
at java.util.Arrays.sort(Arrays.java:1506)
at java.util.ArrayList.sort(ArrayList.java:1464)
at java.util.Collections.sort(Collections.java:143)
at org.pathvisio.core.model.GpmlFormat2013a.createJdom(Unknown Source)
at org.pathvisio.core.model.GpmlFormat2013a.writeToXml(Unknown Source)
at org.pathvisio.core.model.GpmlFormat2013a.writeToXml(Unknown Source)
at org.pathvisio.core.model.GpmlFormat.writeToXml(Unknown Source)
at org.pathvisio.core.model.Pathway.writeToXml(Unknown Source)
at org.wikipathways.SyncAction.main(Unknown Source)
Error: Process completed with exit code 1.

[AlexanderPico]

Please restore "approved" tag on WP366 when pathway or code is fixed.

[egonw]

WP1045 is another one. I also removed the "approved" tag on that one. It's an homology converted pathway, btw.

[egonw]

I can confirm the 2.1 version has the same problem, but it's nice that that one reports the failing pathway.

(Oh, and I think we may have in one of the other repositories another failing pathway somewhere, that may have the same course?)