MultiAssayExperiment/_pkgdown.yml at devel · waldronlab/MultiAssayExperiment · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
title: MultiAssayExperiment
url: https://github.com/waldronlab/MultiAssayExperiment

template:
  bootstrap: 5
  params:
    bootswatch: flatly

reference:
  - title: Classes
    desc: Exported classes
    contents:
      - ExperimentList-class
      - MultiAssayExperiment-class
      - MatchedAssayExperiment-class
  - title: Constructors
    desc: Build objects with designated constructor functions
    contents:
      - MultiAssayExperiment
      - ExperimentList
  - title: Methods and Accessors
    desc: Discover content within MultiAssayExperiment
    contents:
      - MultiAssayExperiment-class
      - MultiAssayExperiment-methods
  - title: Subsetting
    desc: Easy operations for selecting rows, columns, and/or biological units
    contents:
      - subsetBy
  - title: Management and Reshaping
    desc: Work with and reshape data
    contents:
      - MultiAssayExperiment-helpers
      - upsetSamples
      - listToMap
      - prepMultiAssay
  - title: External Formats
    desc: Compatibility with other Bioconductor packages
    contents:
      - saveHDF5MultiAssayExperiment
      - MultiAssayExperimentToMAF
  - title: Misc. Package Docs
    desc: Other package information and data
    contents:
      - MultiAssayExperiment-package
      - hasAssay
      - reexports
      - miniACC

navbar:
  title: ~
  type: default
  left:
    - text: Quick Reference
      href: reference/index.html
    - text: Vignettes
      menu:
      - text: Quick Start Guide
        href: articles/QuickStartMultiAssay.html
      - text: Getting Started
        href: articles/MultiAssayExperiment.html
      - text: Using DelayedMatrix
        href: articles/UsingHDF5Array.html
      - text: MultiAssayExperiment in Practice
        href: articles/extras/MAE-curatedMetagenomicData.html
    - text: News
      menu:
      - text: "Release Notes"
        href: news/index.html
  right:
  - icon: fa-github fa-lg
    href: https://github.com/waldronlab/MultiAssayExperiment