0.0.1 #1
Workflow file for this run
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: release-main | |
| on: | |
| release: | |
| types: [published] | |
| branches: [main] | |
| jobs: | |
| publish: | |
| strategy: | |
| matrix: # python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| python-version: ["3.11", "3.12"] | |
| # os: [macos-13, windows-latest, ubuntu-latest, macos-14] | |
| os: [ubuntu-latest, macos-14] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Check out | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| fetch-depth: 2 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: abatilo/actions-poetry@v3 | |
| - name: setup graalvm for static native build | |
| uses: graalvm/setup-graalvm@v1 | |
| with: | |
| java-version: "23" | |
| distribution: "graalvm-community" | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| components: "native-image" | |
| # native-image-musl: 'true' # Now semi-static by not including libc | |
| native-image-job-reports: "true" | |
| cache: "maven" | |
| - name: build entire project | |
| working-directory: vcell_submodule | |
| run: | | |
| mvn --batch-mode clean install dependency:copy-dependencies -DskipTests=true | |
| - name: test, record, and build/install native library (ubuntu) | |
| working-directory: vcell-native | |
| run: | | |
| mvn --batch-mode clean install | |
| java -agentlib:native-image-agent=config-output-dir=target/recording \ | |
| -jar target/vcell-native-1.0-SNAPSHOT.jar \ | |
| "src/test/resources/TinySpacialProject_Application0.xml" \ | |
| "target/sbml-input" | |
| mvn --batch-mode -P shared-dll package | |
| cp target/libvcell.so ../libvcell/_internal/libs | |
| if: ${{ startsWith(matrix.os, 'ubuntu') }} | |
| - name: test, record, and build/install native library (macos) | |
| working-directory: vcell-native | |
| run: | | |
| mvn --batch-mode clean install | |
| java -agentlib:native-image-agent=config-output-dir=target/recording \ | |
| -jar target/vcell-native-1.0-SNAPSHOT.jar \ | |
| "src/test/resources/TinySpacialProject_Application0.xml" \ | |
| "target/sbml-input" | |
| mvn --batch-mode -P shared-dll package | |
| cp target/libvcell.dylib ../libvcell/_internal/libs | |
| if: ${{ startsWith(matrix.os, 'macos') }} | |
| - name: test, record, and build/install native library (windows) | |
| working-directory: vcell-native | |
| run: | | |
| mvn --batch-mode clean install | |
| java -agentlib:native-image-agent=config-output-dir=target\recording -jar "target\vcell-native-1.0-SNAPSHOT.jar" "src\test\resources\TinySpacialProject_Application0.xml" "target\sbml-input" | |
| mvn --batch-mode -P shared-dll package | |
| cp target/libvcell.dll ../libvcell/_internal/libs | |
| if: ${{ startsWith(matrix.os, 'windows') }} | |
| - name: Install python dependencies | |
| run: poetry install --no-interaction | |
| - name: Run tests | |
| run: poetry run pytest tests | |
| - name: Export tag | |
| id: vars | |
| run: echo tag=${GITHUB_REF#refs/*/} >> $GITHUB_OUTPUT | |
| - name: Build and publish | |
| run: | | |
| source .venv/bin/activate | |
| poetry version $RELEASE_VERSION | |
| make build-and-publish | |
| env: | |
| PYPI_TOKEN: ${{ secrets.PYPI_TOKEN }} | |
| RELEASE_VERSION: ${{ steps.vars.outputs.tag }} | |
| deploy-docs: | |
| needs: publish | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out | |
| uses: actions/checkout@v4 | |
| - name: Set up the environment | |
| uses: ./.github/actions/setup-poetry-env | |
| - name: Deploy documentation | |
| run: poetry run mkdocs gh-deploy --force |