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package hdf5
import (
"encoding/binary"
"fmt"
"math"
"os"
"path/filepath"
"testing"
"github.com/scigolib/hdf5/internal/core"
"github.com/stretchr/testify/require"
)
// TestWriteCov_EncodeOpaqueData_WrongType tests encodeOpaqueData with non-[]byte input.
func TestWriteCov_EncodeOpaqueData_WrongType(t *testing.T) {
// encodeOpaqueData expects []byte; passing string should error.
_, err := encodeOpaqueData("not bytes", 10)
require.Error(t, err)
require.Contains(t, err.Error(), "must be []byte")
}
// TestWriteCov_EncodeOpaqueData_SizeMismatch tests encodeOpaqueData with wrong size.
func TestWriteCov_EncodeOpaqueData_SizeMismatch(t *testing.T) {
data := []byte{1, 2, 3}
_, err := encodeOpaqueData(data, 10) // expected 10, got 3
require.Error(t, err)
require.Contains(t, err.Error(), "size mismatch")
}
// TestWriteCov_EncodeOpaqueData_Success tests encodeOpaqueData with correct input.
func TestWriteCov_EncodeOpaqueData_Success(t *testing.T) {
data := []byte{0xDE, 0xAD, 0xBE, 0xEF}
result, err := encodeOpaqueData(data, 4)
require.NoError(t, err)
require.Equal(t, data, result)
}
// TestWriteCov_InitializeFileWriter_InvalidMode tests initializeFileWriter with invalid CreateMode.
func TestWriteCov_InitializeFileWriter_InvalidMode(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "invalid_mode.h5")
_, err := initializeFileWriter(filename, CreateMode(999), 48)
require.Error(t, err)
require.Contains(t, err.Error(), "invalid create mode")
}
// TestWriteCov_CalculateObjectHeaderSize_V1Error tests calculateObjectHeaderSize with v1 header.
func TestWriteCov_CalculateObjectHeaderSize_V1Error(t *testing.T) {
ohw := &core.ObjectHeaderWriter{
Version: 1, // Not supported
Flags: 0,
Messages: []core.MessageWriter{
{Type: core.MsgDatatype, Data: []byte{1, 2, 3, 4}},
},
}
_, err := calculateObjectHeaderSize(ohw)
require.Error(t, err)
require.Contains(t, err.Error(), "only object header version 2 supported")
}
// TestWriteCov_FileWriterClose_DoubleClose tests that calling Close twice is safe.
func TestWriteCov_FileWriterClose_DoubleClose(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "double_close.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
// First close should succeed.
err = fw.Close()
require.NoError(t, err)
// Second close should be a no-op (fw.writer == nil).
err = fw.Close()
require.NoError(t, err)
}
// TestWriteCov_DatasetWriterClose tests DatasetWriter.Close (no-op).
func TestWriteCov_DatasetWriterClose(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "ds_close.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
ds, err := fw.CreateDataset("/data", Float64, []uint64{5})
require.NoError(t, err)
// DatasetWriter.Close is a no-op but should not error.
err = ds.Close()
require.NoError(t, err)
// Can still write after Close (no-op behavior).
data := []float64{1.0, 2.0, 3.0, 4.0, 5.0}
err = ds.Write(data)
require.NoError(t, err)
}
// TestWriteCov_RebalancingEnabledDisabled tests toggle of rebalancing.
func TestWriteCov_RebalancingEnabledDisabled(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "rebalance_toggle.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
// Default: enabled.
require.True(t, fw.RebalancingEnabled())
// Disable.
fw.DisableRebalancing()
require.False(t, fw.RebalancingEnabled())
// Enable again.
fw.EnableRebalancing()
require.True(t, fw.RebalancingEnabled())
}
// TestWriteCov_RebalancingEnabled_NilConfig tests RebalancingEnabled when config is nil.
func TestWriteCov_RebalancingEnabled_NilConfig(t *testing.T) {
// Create a FileWriter with nil config to test the nil branch.
fw := &FileWriter{config: nil}
require.True(t, fw.RebalancingEnabled(), "nil config should return true (default)")
}
// TestWriteCov_OpenForWrite_ModifyExisting tests OpenForWrite on existing file.
func TestWriteCov_OpenForWrite_ModifyExisting(t *testing.T) {
filename := filepath.Join("tmp", "cov_openforwrite.h5")
_ = os.MkdirAll("tmp", 0o755)
defer func() { _ = os.Remove(filename) }()
// Phase 1: Create file with a dataset and write data.
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
ds, err := fw.CreateDataset("/temperature", Float64, []uint64{5})
require.NoError(t, err)
err = ds.Write([]float64{10.0, 20.0, 30.0, 40.0, 50.0})
require.NoError(t, err)
// Write compact attributes.
err = ds.WriteAttribute("units", "Celsius")
require.NoError(t, err)
err = ds.WriteAttribute("sensor_id", int32(42))
require.NoError(t, err)
err = fw.Close()
require.NoError(t, err)
// Phase 2: OpenForWrite and verify we can open dataset.
fw2, err := OpenForWrite(filename, OpenReadWrite)
require.NoError(t, err)
ds2, err := fw2.OpenDataset("/temperature")
require.NoError(t, err)
require.NotNil(t, ds2)
// Add an attribute via OpenForWrite path.
err = ds2.WriteAttribute("calibration", int32(100))
require.NoError(t, err)
err = fw2.Close()
require.NoError(t, err)
// Also close the underlying file reader to release Windows file handles.
if fw2.file != nil {
_ = fw2.file.Close()
}
// Phase 3: Verify file is still readable.
f, err := Open(filename)
require.NoError(t, err)
require.NotNil(t, f.Root())
_ = f.Close()
}
// TestWriteCov_OpenForWrite_V0File tests OpenForWrite on a v0 superblock file.
// V0 files with datasets have known SNOD issues for linking; this test verifies
// that CreateForWrite with v0 works for empty files (no datasets).
func TestWriteCov_OpenForWrite_V0File(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "openforwrite_v0.h5")
// Create v0 file without datasets (empty root group).
fw, err := CreateForWrite(filename, CreateTruncate, WithSuperblockVersion(core.Version0))
require.NoError(t, err)
require.NotNil(t, fw)
// Verify v0 structure addresses are set.
require.Equal(t, uint64(96), fw.rootGroupAddr, "V0 root group starts at offset 96")
require.Greater(t, fw.rootBTreeAddr, uint64(0))
require.Greater(t, fw.rootHeapAddr, uint64(0))
require.Greater(t, fw.rootStNodeAddr, uint64(0))
err = fw.Close()
require.NoError(t, err)
// Verify file exists.
info, err := os.Stat(filename)
require.NoError(t, err)
require.Greater(t, info.Size(), int64(0))
}
// TestWriteCov_OpenForWrite_ReadOnly tests OpenForWrite with ReadOnly mode.
// On Windows, closing a read-only opened writer may fail on sync, so we
// only verify that OpenForWrite itself succeeds and the FileWriter has proper state.
func TestWriteCov_OpenForWrite_ReadOnly(t *testing.T) {
filename := filepath.Join("tmp", "cov_openforwrite_ro.h5")
_ = os.MkdirAll("tmp", 0o755)
defer func() { _ = os.Remove(filename) }()
// Create file.
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
_, err = fw.CreateDataset("/data", Int32, []uint64{3})
require.NoError(t, err)
err = fw.Close()
require.NoError(t, err)
// Open read-only. This exercises the OpenReadOnly code path in OpenForWrite.
fw2, err := OpenForWrite(filename, OpenReadOnly)
require.NoError(t, err)
require.NotNil(t, fw2)
require.NotNil(t, fw2.file)
require.NotNil(t, fw2.writer)
// Close may error on Windows (can't sync read-only file), which is expected.
// The important thing is that OpenForWrite succeeded with the ReadOnly path.
_ = fw2.Close()
if fw2.file != nil {
_ = fw2.file.Close()
}
}
// TestWriteCov_OpenForWrite_NonexistentFile tests OpenForWrite on a file that doesn't exist.
func TestWriteCov_OpenForWrite_NonexistentFile(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "does_not_exist.h5")
_, err := OpenForWrite(filename, OpenReadWrite)
require.Error(t, err)
}
// TestWriteCov_CreateCompoundDataset_NilType tests CreateCompoundDataset with nil type.
func TestWriteCov_CreateCompoundDataset_NilType(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "compound_nil.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
_, err = fw.CreateCompoundDataset("/data", nil, []uint64{10})
require.Error(t, err)
require.Contains(t, err.Error(), "cannot be nil")
}
// TestWriteCov_CreateCompoundDataset_WrongClass tests CreateCompoundDataset with non-compound type.
func TestWriteCov_CreateCompoundDataset_WrongClass(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "compound_wrong.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
// Create a non-compound type.
wrongType := &core.DatatypeMessage{
Class: core.DatatypeFixed,
Version: 1,
Size: 4,
}
_, err = fw.CreateCompoundDataset("/data", wrongType, []uint64{10})
require.Error(t, err)
require.Contains(t, err.Error(), "must be compound")
}
// TestWriteCov_CreateCompoundDataset_ThreeFieldRoundTrip tests compound with 3 fields.
func TestWriteCov_CreateCompoundDataset_ThreeFieldRoundTrip(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "compound_3field.h5")
// Define compound: struct { int32 x; int32 y; float64 z }
int32Type, err := core.CreateBasicDatatypeMessage(core.DatatypeFixed, 4)
require.NoError(t, err)
float64Type, err := core.CreateBasicDatatypeMessage(core.DatatypeFloat, 8)
require.NoError(t, err)
fields := []core.CompoundFieldDef{
{Name: "x", Offset: 0, Type: int32Type},
{Name: "y", Offset: 4, Type: int32Type},
{Name: "z", Offset: 8, Type: float64Type},
}
compoundType, err := core.CreateCompoundTypeFromFields(fields)
require.NoError(t, err)
require.Equal(t, uint32(16), compoundType.Size) // 4+4+8
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
ds, err := fw.CreateCompoundDataset("/points", compoundType, []uint64{2})
require.NoError(t, err)
// Write 2 structs manually.
data := make([]byte, 32) // 2 * 16 bytes
// Record 0: x=1, y=2, z=3.14
binary.LittleEndian.PutUint32(data[0:4], 1)
binary.LittleEndian.PutUint32(data[4:8], 2)
binary.LittleEndian.PutUint64(data[8:16], math.Float64bits(3.14))
// Record 1: x=10, y=20, z=6.28
binary.LittleEndian.PutUint32(data[16:20], 10)
binary.LittleEndian.PutUint32(data[20:24], 20)
binary.LittleEndian.PutUint64(data[24:32], math.Float64bits(6.28))
err = ds.WriteRaw(data)
require.NoError(t, err)
err = fw.Close()
require.NoError(t, err)
// Verify file readable.
f, err := Open(filename)
require.NoError(t, err)
_ = f.Close()
}
// TestWriteCov_OpaqueDataset_WriteAndVerify tests opaque dataset write with round-trip.
func TestWriteCov_OpaqueDataset_WriteAndVerify(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "opaque_write.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
// Create opaque dataset: 3 elements of 8 bytes each.
ds, err := fw.CreateDataset("/binary_data", Opaque, []uint64{3}, WithOpaqueTag("custom-format", 8))
require.NoError(t, err)
rawData := make([]byte, 24) // 3*8
for i := range rawData {
rawData[i] = byte(i * 7)
}
err = ds.Write(rawData)
require.NoError(t, err)
err = fw.Close()
require.NoError(t, err)
// Verify file exists and is valid.
info, err := os.Stat(filename)
require.NoError(t, err)
require.Greater(t, info.Size(), int64(0))
f, err := Open(filename)
require.NoError(t, err)
_ = f.Close()
}
// TestWriteCov_ChunkedWithMaxDims tests chunked dataset with maxDims option.
func TestWriteCov_ChunkedWithMaxDims(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "chunked_maxdims.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
// Chunked with unlimited max dimension.
ds, err := fw.CreateDataset("/resizable", Float64, []uint64{20},
WithChunkDims([]uint64{10}),
WithMaxDims([]uint64{Unlimited}))
require.NoError(t, err)
require.NotNil(t, ds)
require.True(t, ds.isChunked)
require.Equal(t, []uint64{Unlimited}, ds.maxDims)
data := make([]float64, 20)
for i := range data {
data[i] = float64(i) * 1.5
}
err = ds.Write(data)
require.NoError(t, err)
err = fw.Close()
require.NoError(t, err)
// Verify file readable.
f, err := Open(filename)
require.NoError(t, err)
_ = f.Close()
}
// TestWriteCov_ChunkedWithFixedMaxDims tests chunked dataset with fixed max dimensions.
func TestWriteCov_ChunkedWithFixedMaxDims(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "chunked_fixed_maxdims.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
ds, err := fw.CreateDataset("/fixed_max", Int32, []uint64{10},
WithChunkDims([]uint64{5}),
WithMaxDims([]uint64{100}))
require.NoError(t, err)
require.Equal(t, []uint64{100}, ds.maxDims)
data := make([]int32, 10)
for i := range data {
data[i] = int32(i)
}
err = ds.Write(data)
require.NoError(t, err)
err = fw.Close()
require.NoError(t, err)
}
// TestWriteCov_ChunkedWithFletcher32 tests chunked dataset with Fletcher32 checksum.
func TestWriteCov_ChunkedWithFletcher32(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "chunked_fletcher32.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
ds, err := fw.CreateDataset("/checksummed", Int32, []uint64{50},
WithChunkDims([]uint64{25}),
WithFletcher32())
require.NoError(t, err)
require.NotNil(t, ds.pipeline)
data := make([]int32, 50)
for i := range data {
data[i] = int32(i * 3)
}
err = ds.Write(data)
require.NoError(t, err)
err = fw.Close()
require.NoError(t, err)
info, err := os.Stat(filename)
require.NoError(t, err)
require.Greater(t, info.Size(), int64(0))
}
// TestWriteCov_ChunkedWithShuffleAndGZIP tests chunked with shuffle+GZIP filters.
func TestWriteCov_ChunkedWithShuffleAndGZIP(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "chunked_shuffle_gzip.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
ds, err := fw.CreateDataset("/compressed", Float64, []uint64{100},
WithChunkDims([]uint64{25}),
WithShuffle(),
WithGZIPCompression(6))
require.NoError(t, err)
require.NotNil(t, ds.pipeline)
data := make([]float64, 100)
for i := range data {
data[i] = float64(i) * 0.01
}
err = ds.Write(data)
require.NoError(t, err)
err = fw.Close()
require.NoError(t, err)
}
// TestWriteCov_CreateGroupWithLinks_EmptyLinks tests CreateGroupWithLinks with no links.
func TestWriteCov_CreateGroupWithLinks_EmptyLinks(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "group_empty_links.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
// Empty links => symbol table format, no error.
err = fw.CreateGroupWithLinks("/empty_group", map[string]string{})
require.NoError(t, err)
err = fw.Close()
require.NoError(t, err)
// Verify file readable.
f, err := Open(filename)
require.NoError(t, err)
_ = f.Close()
}
// TestWriteCov_CreateGroupWithLinks_SmallGroup tests CreateGroupWithLinks with few links.
func TestWriteCov_CreateGroupWithLinks_SmallGroup(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "group_small_links.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
// Creating a symbol table group with links is not supported in MVP.
// 1-8 links triggers symbol table path which returns error for non-empty links.
links := map[string]string{
"link1": "/ds1",
}
err = fw.CreateGroupWithLinks("/small_group", links)
require.Error(t, err)
require.Contains(t, err.Error(), "not yet supported")
}
// TestWriteCov_CreateSoftLink_ConsecutiveSlashes tests CreateSoftLink with consecutive slashes.
func TestWriteCov_CreateSoftLink_ConsecutiveSlashes(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "softlink_bad.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
// Consecutive slashes in link path.
err = fw.CreateSoftLink("//bad//path", "/target")
require.Error(t, err)
require.Contains(t, err.Error(), "consecutive slashes")
}
// TestWriteCov_CreateSoftLink_ConsecutiveSlashesTarget tests soft link target validation.
func TestWriteCov_CreateSoftLink_ConsecutiveSlashesTarget(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "softlink_bad_target.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
// Consecutive slashes in target path.
err = fw.CreateSoftLink("/link", "//bad//target")
require.Error(t, err)
require.Contains(t, err.Error(), "consecutive slashes")
}
// TestWriteCov_CreateSoftLink_EmptyTarget tests soft link with empty target path.
func TestWriteCov_CreateSoftLink_EmptyTarget(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "softlink_empty_target.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
err = fw.CreateSoftLink("/link", "")
require.Error(t, err)
require.Contains(t, err.Error(), "cannot be empty")
}
// TestWriteCov_CreateSoftLink_RelativeTarget tests soft link with relative target.
func TestWriteCov_CreateSoftLink_RelativeTarget(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "softlink_relative.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
err = fw.CreateSoftLink("/link", "relative/path")
require.Error(t, err)
require.Contains(t, err.Error(), "absolute")
}
// TestWriteCov_CreateHardLink_ValidationErrors tests hard link validation edge cases.
func TestWriteCov_CreateHardLink_ValidationErrors(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "hardlink_errors.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
// Empty link path.
err = fw.CreateHardLink("", "/target")
require.Error(t, err)
require.Contains(t, err.Error(), "cannot be empty")
// Root path as link.
err = fw.CreateHardLink("/", "/target")
require.Error(t, err)
require.Contains(t, err.Error(), "cannot create link to root")
// Non-existent target.
err = fw.CreateHardLink("/link", "/nonexistent")
require.Error(t, err)
// Consecutive slashes.
err = fw.CreateHardLink("/link//bad", "/target")
require.Error(t, err)
require.Contains(t, err.Error(), "consecutive slashes")
}
// TestWriteCov_CreateExternalLink_PathTraversal tests external link path traversal prevention.
func TestWriteCov_CreateExternalLink_PathTraversal(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "extlink_traversal.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
err = fw.CreateExternalLink("/link", "../../../etc/passwd", "/data")
require.Error(t, err)
require.Contains(t, err.Error(), "path traversal")
}
// TestWriteCov_CreateExternalLink_EmptyFileName tests external link with empty file name.
func TestWriteCov_CreateExternalLink_EmptyFileName(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "extlink_empty.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
err = fw.CreateExternalLink("/link", "", "/data")
require.Error(t, err)
require.Contains(t, err.Error(), "cannot be empty")
}
// TestWriteCov_SuperblockV0_CreationVerify tests v0 file creation.
// V0 superblock with dataset linking has known SNOD limitations, so we verify
// that the v0 file structure (superblock, B-tree, heap) is created correctly.
func TestWriteCov_SuperblockV0_CreationVerify(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "v0_creation.h5")
fw, err := CreateForWrite(filename, CreateTruncate, WithSuperblockVersion(core.Version0))
require.NoError(t, err)
// Verify v0 layout is correct.
require.Equal(t, uint64(96), fw.rootGroupAddr)
err = fw.Close()
require.NoError(t, err)
// Verify file exists and has reasonable size (superblock + root group structures).
info, err := os.Stat(filename)
require.NoError(t, err)
require.Greater(t, info.Size(), int64(96), "V0 file should be larger than superblock")
// Verify it can be read back as a valid HDF5 file.
f, err := Open(filename)
require.NoError(t, err)
require.Equal(t, uint8(0), f.SuperblockVersion())
_ = f.Close()
}
// TestWriteCov_CreateForWrite_InvalidOptionType tests invalid option type.
func TestWriteCov_CreateForWrite_InvalidOptionType(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "invalid_option.h5")
_, err := CreateForWrite(filename, CreateTruncate, "invalid_option")
require.Error(t, err)
require.Contains(t, err.Error(), "invalid option type")
}
// TestWriteCov_RebalanceAttributeBTree_NoDenseStorage tests RebalanceAttributeBTree
// on a newly created dataset with no attributes (no dense storage, no object header cached).
func TestWriteCov_RebalanceAttributeBTree_NoDenseStorage(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "rebalance_no_dense.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
ds, err := fw.CreateDataset("/data", Float64, []uint64{10})
require.NoError(t, err)
// No attributes written, denseAttrInfo == nil, objectHeader == nil.
// Should be a no-op (returns nil).
err = ds.RebalanceAttributeBTree()
require.NoError(t, err)
}
// TestWriteCov_RebalanceAttributeBTree_DenseViaObjectHeader tests RebalanceAttributeBTree
// on a dataset with 9+ attributes written in the same session (reads object header from file).
func TestWriteCov_RebalanceAttributeBTree_DenseViaObjectHeader(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "rebalance_dense_oh.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
ds, err := fw.CreateDataset("/data", Float64, []uint64{5})
require.NoError(t, err)
// Write 9 attributes to trigger dense storage.
for i := 0; i < 9; i++ {
err = ds.WriteAttribute(fmt.Sprintf("attr_%d", i), int32(i*100))
require.NoError(t, err)
}
// Rebalance triggers the "datasets created in this session" path
// (objectHeader == nil, denseAttrInfo == nil, reads OH from file).
err = ds.RebalanceAttributeBTree()
require.NoError(t, err)
}
// TestWriteCov_RebalanceAttributeBTree_ViaOpenDataset tests RebalanceAttributeBTree
// on a dataset opened with OpenForWrite (has cached denseAttrInfo).
func TestWriteCov_RebalanceAttributeBTree_ViaOpenDataset(t *testing.T) {
filename := filepath.Join("tmp", "cov_rebalance_open.h5")
_ = os.MkdirAll("tmp", 0o755)
defer func() { _ = os.Remove(filename) }()
// Phase 1: Create file with dense attributes.
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
ds, err := fw.CreateDataset("/data", Float64, []uint64{5})
require.NoError(t, err)
for i := 0; i < 9; i++ {
err = ds.WriteAttribute(fmt.Sprintf("attr_%d", i), int32(i))
require.NoError(t, err)
}
err = fw.Close()
require.NoError(t, err)
// Phase 2: Reopen and rebalance.
fw2, err := OpenForWrite(filename, OpenReadWrite)
require.NoError(t, err)
ds2, err := fw2.OpenDataset("/data")
require.NoError(t, err)
// This exercises the denseAttrInfo != nil path.
err = ds2.RebalanceAttributeBTree()
require.NoError(t, err)
_ = fw2.Close()
if fw2.file != nil {
_ = fw2.file.Close()
}
}
// TestWriteCov_DenseAttributeModify_Upsert tests modifying an existing dense attribute.
func TestWriteCov_DenseAttributeModify_Upsert(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "dense_upsert.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
ds, err := fw.CreateDataset("/data", Float64, []uint64{5})
require.NoError(t, err)
// Write 8 attributes to trigger dense storage on the 8th.
for i := 0; i < 8; i++ {
err = ds.WriteAttribute(fmt.Sprintf("attr_%d", i), int32(i))
require.NoError(t, err)
}
// Now modify an existing attribute (upsert semantics in dense storage).
err = ds.WriteAttribute("attr_0", int32(999))
require.NoError(t, err)
err = fw.Close()
require.NoError(t, err)
// Verify readable.
f, err := Open(filename)
require.NoError(t, err)
_ = f.Close()
}
// TestWriteCov_OpenForWrite_DenseUpsertExisting tests modifying dense attribute via OpenForWrite.
func TestWriteCov_OpenForWrite_DenseUpsertExisting(t *testing.T) {
filename := filepath.Join("tmp", "cov_dense_upsert_rmw.h5")
_ = os.MkdirAll("tmp", 0o755)
defer func() { _ = os.Remove(filename) }()
// Phase 1: Create file with 9 dense attributes.
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
ds, err := fw.CreateDataset("/data", Int32, []uint64{5})
require.NoError(t, err)
err = ds.Write([]int32{10, 20, 30, 40, 50})
require.NoError(t, err)
for i := 0; i < 9; i++ {
err = ds.WriteAttribute(fmt.Sprintf("attr_%d", i), int32(i*10))
require.NoError(t, err)
}
err = fw.Close()
require.NoError(t, err)
// Phase 2: Reopen, modify existing dense attribute.
fw2, err := OpenForWrite(filename, OpenReadWrite)
require.NoError(t, err)
ds2, err := fw2.OpenDataset("/data")
require.NoError(t, err)
// Modify existing attribute via writeDenseAttributeWithInfo (upsert path).
err = ds2.WriteAttribute("attr_0", int32(9999))
require.NoError(t, err)
// Add a new attribute via writeDenseAttributeWithInfo (create path).
err = ds2.WriteAttribute("new_attr", int32(42))
require.NoError(t, err)
err = fw2.Close()
require.NoError(t, err)
// Close underlying file reader to release Windows file handles.
if fw2.file != nil {
_ = fw2.file.Close()
}
// Verify file is readable.
f, err := Open(filename)
require.NoError(t, err)
_ = f.Close()
}
// TestWriteCov_CreateDenseGroup_NoLeadingSlash tests dense group validation - missing slash.
func TestWriteCov_CreateDenseGroup_NoLeadingSlash(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "dense_group_invalid.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
// Missing leading slash.
err = fw.CreateDenseGroup("no_slash", map[string]string{})
require.Error(t, err)
require.Contains(t, err.Error(), "must start with")
}
// TestWriteCov_CreateDenseGroup_EmptyLinks tests dense group with no links (error).
func TestWriteCov_CreateDenseGroup_EmptyLinks(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "dense_group_empty.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
// Empty links for dense group should error (dense requires at least one link).
err = fw.CreateDenseGroup("/empty_dense", map[string]string{})
require.Error(t, err)
require.Contains(t, err.Error(), "at least one link")
}
// TestWriteCov_CreateDenseGroup_NonexistentParent tests dense group with non-existent parent.
func TestWriteCov_CreateDenseGroup_NonexistentParent(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "dense_group_no_parent.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
// Create a dataset target so links are valid, but parent doesn't exist.
_, err = fw.CreateDataset("/target", Int32, []uint64{1})
require.NoError(t, err)
err = fw.CreateDenseGroup("/nonexistent/child", map[string]string{"link1": "/target"})
require.Error(t, err)
require.Contains(t, err.Error(), "does not exist")
}
// TestWriteCov_ChunkedDataset_ValidationErrors tests chunked dataset creation validation.
func TestWriteCov_ChunkedDataset_ValidationErrors(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "chunked_errors.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
// Chunk dims mismatch.
_, err = fw.CreateDataset("/bad1", Int32, []uint64{10},
WithChunkDims([]uint64{5, 5})) // 2D chunks for 1D dataset
require.Error(t, err)
require.Contains(t, err.Error(), "must match dataset dimensions")
// Zero chunk dim.
_, err = fw.CreateDataset("/bad2", Int32, []uint64{10},
WithChunkDims([]uint64{0}))
require.Error(t, err)
require.Contains(t, err.Error(), "cannot be zero")
// Chunk dim exceeds dataset dim.
_, err = fw.CreateDataset("/bad3", Int32, []uint64{10},
WithChunkDims([]uint64{20}))
require.Error(t, err)
require.Contains(t, err.Error(), "cannot exceed")
}
// TestWriteCov_RebalanceAllBTrees tests RebalanceAllBTrees (MVP no-op).
func TestWriteCov_RebalanceAllBTrees(t *testing.T) {
tmpDir := t.TempDir()
filename := filepath.Join(tmpDir, "rebalance_all.h5")
fw, err := CreateForWrite(filename, CreateTruncate)
require.NoError(t, err)
defer func() { _ = fw.Close() }()
// MVP: returns nil (no-op).
err = fw.RebalanceAllBTrees()
require.NoError(t, err)
}
// TestWriteCov_ValidateLinkPath tests validateLinkPath edge cases.
func TestWriteCov_ValidateLinkPath(t *testing.T) {
tests := []struct {
name string
path string
wantErr string
}{
{"empty", "", "cannot be empty"},
{"no leading slash", "bad", "must start with '/'"},
{"root", "/", "cannot create link to root"},
{"consecutive slashes", "/a//b", "consecutive slashes"},
{"valid", "/a/b", ""},
}
for _, tt := range tests {
t.Run(tt.name, func(t *testing.T) {
err := validateLinkPath(tt.path)
if tt.wantErr != "" {
require.Error(t, err)
require.Contains(t, err.Error(), tt.wantErr)
} else {
require.NoError(t, err)
}
})
}
}
// TestWriteCov_ValidateGroupPath tests validateGroupPath edge cases.
func TestWriteCov_ValidateGroupPath(t *testing.T) {
tests := []struct {
name string
path string
wantErr string
}{
{"empty", "", "cannot be empty"},
{"no slash", "data", "must start with '/'"},
{"root", "/", "root group already exists"},
{"valid", "/group", ""},
}
for _, tt := range tests {
t.Run(tt.name, func(t *testing.T) {
err := validateGroupPath(tt.path)
if tt.wantErr != "" {
require.Error(t, err)
require.Contains(t, err.Error(), tt.wantErr)
} else {
require.NoError(t, err)
}
})
}
}
// TestWriteCov_ParsePath tests parsePath with various inputs.
func TestWriteCov_ParsePath(t *testing.T) {
tests := []struct {
path string
wantParent string
wantName string
}{
{"/", "", ""},
{"/group1", "", "group1"},
{"/data/experiments", "/data", "experiments"},
{"/a/b/c", "/a/b", "c"},
{"/trailing/", "", "trailing"},
}
for _, tt := range tests {
t.Run(tt.path, func(t *testing.T) {
parent, name := parsePath(tt.path)
require.Equal(t, tt.wantParent, parent)
require.Equal(t, tt.wantName, name)
})
}
}