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Adjust par in wu BC dataset script
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  • src/datasets/loaders/wu_human_breast_cancer_sc

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src/datasets/loaders/wu_human_breast_cancer_sc/script.py

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Original file line numberDiff line numberDiff line change
@@ -10,7 +10,7 @@
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par = {
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"cancer_subtypes": ['HER2+', 'TNBC', 'ER+'],
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"keep_files": True, # wether to delete the intermediate files
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"output": "2021Wu_human_breast_cancer_sc.h5ad",
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"output": "./temp/datasets/2021Wu_human_breast_cancer_sc.h5ad",
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"dataset_id": "2021Wu_human_breast_cancer_sc",
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"dataset_name": "2021Wu_human_breast_cancer_sc",
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"dataset_url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE176078",
@@ -20,7 +20,7 @@
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"dataset_organism": "Homo sapiens"
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}
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meta = {
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"temp_dir": "./tmp/2021Wu_human_breast_cancer_sc",
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"temp_dir": "./temp/datasets/2021Wu_human_breast_cancer_sc",
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}
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## VIASH END
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