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Author: franzpoeschel

include/openPMD/auxiliary/StringManip.hpp

@@ -243,6 +243,13 @@ namespace auxiliary
         return std::forward<S>(s);
     }
 
+    /** Create a string representation of a vector or another iterable
+     *  container.
+     *
+     * @param v The vector or other iterable container.
+     * @return A string that shows the items of the container. Each item is
+     *         formatted using the default definition for operator<<().
+     */
     template <typename Vec>
     auto format_vec(Vec const &v) -> std::string
     {
@@ -254,6 +261,7 @@ namespace auxiliary
         auto end = v.end();
         std::stringstream res;
         res << '[' << *it++;
+        res.operator<<(*it);
         for (; it != end; ++it)
         {
             res << ", " << *it;

test/ParallelIOTest.cpp

@@ -5,6 +5,7 @@
 #include "openPMD/IO/Access.hpp"
 #include "openPMD/auxiliary/Environment.hpp"
 #include "openPMD/auxiliary/Filesystem.hpp"
+#include "openPMD/backend/PatchRecordComponent.hpp"
 #include "openPMD/openPMD.hpp"
 #include <catch2/catch.hpp>
 
@@ -398,7 +399,7 @@ void available_chunks_test(std::string const &file_ending)
     MPI_Comm_size(MPI_COMM_WORLD, &r_mpi_size);
     unsigned mpi_rank{static_cast<unsigned>(r_mpi_rank)},
         mpi_size{static_cast<unsigned>(r_mpi_size)};
-    std::string name = "../samples/available_chunks." + file_ending;
+    std::string name = "../samples/parallel_available_chunks." + file_ending;
 
     /*
      * ADIOS2 assigns writerIDs to blocks in a BP file by id of the substream
@@ -411,7 +412,6 @@ void available_chunks_test(std::string const &file_ending)
     {
         "engine":
         {
-            "type": "bp4",
             "parameters":
             {
                 "NumAggregators":)END"
@@ -432,6 +432,14 @@ void available_chunks_test(std::string const &file_ending)
         E_x.resetDataset({Datatype::INT, {mpi_size, 4}});
         E_x.storeChunk(data, {mpi_rank, 0}, {1, 4});
 
+        /*
+         * Verify that block decomposition also works in "local value" variable
+         * shape. That shape instructs the data to participate in ADIOS2
+         * metadata aggregation, hence there is only one "real" written block,
+         * the aggregated one. We still need the original logical blocks to be
+         * present in reading.
+         */
+
         auto electrons = it0.particles["e"].particlePatches;
         auto numParticles = electrons["numParticles"];
         auto numParticlesOffset = electrons["numParticlesOffset"];
@@ -504,12 +512,40 @@ void available_chunks_test(std::string const &file_ending)
         {
             REQUIRE(ranks[i] == i);
         }
+
+        auto electrons = it0.particles["e"].particlePatches;
+        for (PatchRecordComponent *prc :
+             {static_cast<PatchRecordComponent *>(&electrons["numParticles"]),
+              static_cast<PatchRecordComponent *>(
+                  &electrons["numParticlesOffset"]),
+              &electrons["offset"]["x"],
+              &electrons["offset"]["y"],
+              &electrons["extent"]["z"],
+              &electrons["offset"]["x"],
+              &electrons["extent"]["y"],
+              &electrons["extent"]["z"]})
+        {
+            auto available_chunks = prc->availableChunks();
+            REQUIRE(size_t(r_mpi_size) == available_chunks.size());
+            for (size_t i = 0; i < available_chunks.size(); ++i)
+            {
+                auto const &chunk = available_chunks[i];
+                REQUIRE(chunk.extent == Extent{1});
+                REQUIRE(chunk.offset == Offset{i});
+                REQUIRE(chunk.sourceID == i);
+            }
+        }
     }
 }
 
 TEST_CASE("available_chunks_test", "[parallel][adios]")
 {
+#if HAS_ADIOS_2_9
+    available_chunks_test("bp4");
+    available_chunks_test("bp5");
+#else
     available_chunks_test("bp");
+#endif
 }
 #endif