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openMINDS pipeline
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-383
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23 files changed

+538
-383
lines changed

‎code/enumerations/latest/+openminds/+enum/Types.m‎

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StockNumber("openminds.core.digitalidentifier.StockNumber")
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Comment("openminds.core.miscellaneous.Comment")
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Funding("openminds.core.miscellaneous.Funding")
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GeoCoordinates("openminds.core.miscellaneous.GeoCoordinates")
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Location("openminds.core.miscellaneous.Location")
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QuantitativeValue("openminds.core.miscellaneous.QuantitativeValue")
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QuantitativeValueArray("openminds.core.miscellaneous.QuantitativeValueArray")
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QuantitativeValueRange("openminds.core.miscellaneous.QuantitativeValueRange")

‎code/types/latest/+openminds/+computation/ValidationTest.m‎

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end
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properties (Access = protected)
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Required = ["description", "developer", "fullName", "hasVersion", "shortName"]
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Required = ["description", "developer", "fullName", "shortName"]
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end
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properties (Constant, Hidden)

‎code/types/latest/+openminds/+computation/WorkflowRecipe.m‎

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end
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properties (Access = protected)
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Required = ["description", "developer", "fullName", "hasVersion", "shortName"]
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Required = ["description", "developer", "fullName", "shortName"]
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end
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properties (Constant, Hidden)

‎code/types/latest/+openminds/+controlledterms/UBERONParcellation.m‎

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"cerebralHemisphereGrayMatter", ...
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"cerebralHemisphereWhiteMatter", ...
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"cerebralNerveFasciculus", ...
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"cerebralNuclei", ...
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"cerebralPeduncle", ...
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"cerebralSubcortex", ...
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"cerebralVein", ...

‎code/types/latest/+openminds/+core/+miscellaneous/GeoCoordinates.m‎

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classdef GeoCoordinates < openminds.abstract.Schema
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%GeoCoordinates - No description available.
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%
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% PROPERTIES:
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%
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% elevation : (1,1) double
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% Enter the elevation of the location in metres, following the definitions of the WGS84 system.
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%
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% latitude : (1,1) double
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% Enter the latitude of the location in decimal degrees, following the definitions of the WGS84 system.
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%
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% longitude : (1,1) double
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% Enter the longitude of the location in decimal degrees, following the definitions of the WGS84 system.
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% This class was auto-generated by the openMINDS pipeline
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properties
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% Enter the elevation of the location in metres, following the definitions of the WGS84 system.
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elevation (1,1) double
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% Enter the latitude of the location in decimal degrees, following the definitions of the WGS84 system.
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latitude (1,1) double
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% Enter the longitude of the location in decimal degrees, following the definitions of the WGS84 system.
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longitude (1,1) double
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end
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properties (Access = protected)
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Required = ["latitude", "longitude"]
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end
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properties (Constant, Hidden)
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X_TYPE = "https://openminds.om-i.org/types/GeoCoordinates"
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end
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properties (Constant, Hidden)
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LINKED_PROPERTIES = struct(...
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)
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EMBEDDED_PROPERTIES = struct(...
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)
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end
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methods
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function obj = GeoCoordinates(structInstance, propValues)
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arguments
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structInstance (1,:) {mustBeA(structInstance, 'struct')} = struct.empty
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propValues.?openminds.core.miscellaneous.GeoCoordinates
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propValues.id (1,1) string
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end
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propValues = namedargs2cell(propValues);
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obj@openminds.abstract.Schema(structInstance, propValues{:})
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end
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end
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methods (Access = protected)
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function str = getDisplayLabel(obj)
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str = obj.createLabelForMissingLabelDefinition();
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end
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end
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end

‎code/types/latest/+openminds/+core/+miscellaneous/Location.m‎

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classdef Location < openminds.abstract.Schema
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%Location - No description available.
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%
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% PROPERTIES:
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%
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% address : (1,1) string
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% Enter the address of the location, in the format [Street address], City, [Region/State], [Postal code]. The minimum requested information is City.
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%
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% country : (1,1) <a href="matlab:help openminds.controlledterms.SovereignState" style="font-weight:bold">SovereignState</a>
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% Enter the country in which the location is found.
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%
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% geoCoordinates : (1,1) <a href="matlab:help openminds.core.miscellaneous.GeoCoordinates" style="font-weight:bold">GeoCoordinates</a>
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% Enter the geographic coordinates of the location.
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% This class was auto-generated by the openMINDS pipeline
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properties
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% Enter the address of the location, in the format [Street address], City, [Region/State], [Postal code]. The minimum requested information is City.
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address (1,1) string
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% Enter the country in which the location is found.
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country (1,:) openminds.controlledterms.SovereignState ...
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{mustBeSpecifiedLength(country, 0, 1)}
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% Enter the geographic coordinates of the location.
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geoCoordinates (1,:) openminds.core.miscellaneous.GeoCoordinates ...
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{mustBeSpecifiedLength(geoCoordinates, 0, 1)}
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end
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properties (Access = protected)
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Required = ["country"]
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end
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properties (Constant, Hidden)
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X_TYPE = "https://openminds.om-i.org/types/Location"
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end
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properties (Constant, Hidden)
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LINKED_PROPERTIES = struct(...
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'country', "openminds.controlledterms.SovereignState" ...
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)
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EMBEDDED_PROPERTIES = struct(...
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'geoCoordinates', "openminds.core.miscellaneous.GeoCoordinates" ...
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)
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end
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methods
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function obj = Location(structInstance, propValues)
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arguments
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structInstance (1,:) {mustBeA(structInstance, 'struct')} = struct.empty
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propValues.?openminds.core.miscellaneous.Location
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propValues.id (1,1) string
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end
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propValues = namedargs2cell(propValues);
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obj@openminds.abstract.Schema(structInstance, propValues{:})
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end
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end
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methods (Access = protected)
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function str = getDisplayLabel(obj)
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str = obj.createLabelForMissingLabelDefinition();
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end
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end
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end

‎code/types/latest/+openminds/+core/+products/Dataset.m‎

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% fullName : (1,1) string
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% Enter a descriptive full name (or title) for this research product. Note that this should be a suitable full name for all attached research product versions.
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%
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% hasVersion : (1,:) <a href="matlab:help openminds.core.products.DatasetVersion" style="font-weight:bold">DatasetVersion</a>
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% Add all versions of this dataset.
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%
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% homepage : (1,1) string
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% Enter the internationalized resource identifier (IRI) to the homepage of this research product.
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%
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% Enter a descriptive full name (or title) for this research product. Note that this should be a suitable full name for all attached research product versions.
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fullName (1,1) string
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% Add all versions of this dataset.
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hasVersion (1,:) openminds.core.products.DatasetVersion ...
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{mustBeListOfUniqueItems(hasVersion)}
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% Enter the internationalized resource identifier (IRI) to the homepage of this research product.
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homepage (1,1) string
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end
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properties (Access = protected)
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Required = ["author", "description", "fullName", "hasVersion", "shortName"]
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Required = ["author", "description", "fullName", "shortName"]
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end
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properties (Constant, Hidden)
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LINKED_PROPERTIES = struct(...
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'author', ["openminds.core.actors.Consortium", "openminds.core.actors.Organization", "openminds.core.actors.Person"], ...
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'custodian', ["openminds.core.actors.Consortium", "openminds.core.actors.Organization", "openminds.core.actors.Person"], ...
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'digitalIdentifier', ["openminds.core.digitalidentifier.DOI", "openminds.core.digitalidentifier.IdentifiersDotOrgID"], ...
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'hasVersion', "openminds.core.products.DatasetVersion" ...
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'digitalIdentifier', ["openminds.core.digitalidentifier.DOI", "openminds.core.digitalidentifier.IdentifiersDotOrgID"] ...
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)
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EMBEDDED_PROPERTIES = struct(...
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)

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