new module: SegmentationBenchmark

[BioinfoTongLI]

Is there an existing module for this?

• I have searched for the existing module

Is there an open PR for this?

• I have searched for existing PRs

Is there an open issue for this?

• I have searched for existing issues

Further Information

This module will take two label images as input (one ground truth and another for comparison).
In the end, this module will return a tabular data for a range of metrics reflecting the goodness of segmentation.
We are currentlly planning on merging metrics from BIAFLOWS and MONAI

The code will be generated during the nf-core hackathon 2025 in March

Are you going to work on this?

• If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module

[BioinfoTongLI]

@cakirb @StasMakarchuk @YinshuiChang

[vagkaratzas]

@BioinfoTongLI are you still planning to work on this? Otherwise we can close this issue for now.

[BioinfoTongLI]

sorry for the delayed response. maybe close it for now. I'll reopen when I will be more available